RNA id: TU409899


Basic Information

Item Value
RNA id TU409899
length 496
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G360786
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4875536 ~ 4876115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagagatacagatacattacagagacacattacagagatacagatacattacagagatacattacagagatacattacatagacatattacagagacacattacagagacacattacatagacacattacagagacacattacagagacacattacatatacacattacagagacacattacatagatacattacagagacacattacagagatacagatacattacagagacacattacagagacacattacatagacacattacagagacacattacagagatacattacagagacacattacagagacacattacatagacacattacagagatacattacagagacacattacagagacacattacagagacacattacagagatacattacagagatacagatacattacagagatacattacagagacacattacagagacacattacagagatacattacagagacacattacagagatacattacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409894 lncRNA upstream 3262 4866875 ~ 4872274 (+) True G360782
TU409893 lncRNA upstream 9169 4865335 ~ 4866367 (+) True G360781
TU409876 lncRNA upstream 31833 4839259 ~ 4843703 (+) True G360766
TU409864 lncRNA upstream 53610 4821653 ~ 4821926 (+) True G360755
TU409860 lncRNA upstream 57425 4817848 ~ 4818111 (+) True G360751
TU409939 lncRNA downstream 53235 4929350 ~ 4930245 (+) True G360813
TU409977 lncRNA downstream 105017 4981132 ~ 4981584 (+) True G360842
TU409988 lncRNA downstream 120341 4996456 ~ 4997278 (+) False G360848
TU409991 lncRNA downstream 120341 4996456 ~ 4997278 (+) True G360848
TU409999 lncRNA downstream 126500 5002615 ~ 5003303 (+) True G360851
XM_036976633.1 mRNA upstream 204951 4654146 ~ 4670585 (+) True LOC110523121
XM_036976624.1 mRNA upstream 276760 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA upstream 276760 4561352 ~ 4598776 (+) True LOC110523122
XM_036976626.1 mRNA upstream 276963 4561350 ~ 4598573 (+) False LOC110523122
XM_036976627.1 mRNA upstream 308506 4561350 ~ 4567030 (+) False LOC110523122
XM_036976636.1 mRNA downstream 32344 4908459 ~ 5339339 (+) False tcf4
XM_036976640.1 mRNA downstream 33650 4909765 ~ 5339339 (+) False tcf4
XM_036976641.1 mRNA downstream 33650 4909765 ~ 5339339 (+) False tcf4
XM_036976637.1 mRNA downstream 33651 4909766 ~ 5339339 (+) False tcf4
XM_036976638.1 mRNA downstream 33651 4909766 ~ 5339339 (+) False tcf4
TU409301 other upstream 227536 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 327680 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 455467 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 530019 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 864180 4008748 ~ 4011356 (+) True G360121
TU410157 other downstream 420755 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 927713 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 927713 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 2309811 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 2309915 7186030 ~ 7189819 (+) True G362297

Expression Profile