RNA id: TCONS_00031296


Basic Information

Item Value
RNA id TCONS_00031296
length 560
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_015714
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36828243 ~ 36854500 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTGACCCATCATCAGGAGGAAAGCAGACTGGAGACAGAAAGTCAGTATTGCTCTATTCAAGGCTGCGCGTGCGTTTCCCCTGTTTTACAGCAGAGTCATAAACAGCCCCGTTCACCTCAGCCCCAGTGCTAAAATAGCGTCATTGTTCAGGATGCCCCAGACAAACAAGTTCAAATGTGCTGCAGCCAGCAGTCCGGCTCAATCTGCTGGTCCTGACCGTGGGGAACCAGTCAGAGACCCCAACGCACCTCCAGGGGACAGTGGTGGAGATGAAAACCAGGGAGACCCTCAGATTATCAAATCACCCAGTGACCCCAAACAATACAGATATATTGAGCTGAGTAATGGACTGAGGGCTCTGCTCATCTCTGATCTGAGCGGTTTAGATGGGAAAGctgaagatgaggatgatgaagattCTGAAGAGGAGGAGGCGGAAGAGGAGGCAGAGGGAGAGGAAGAAGAGGGAGACTCGGGGGAAGGAACGGATGAGGAATCTGAAGAGGAAGGAGACAGTCAGGATAGCGATTTTGAGGAGCTAGATGAGGAAAGTgacca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-417 Predicted to enable metal ion binding activity and metallopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human NRDC (nardilysin convertase).

Ensembl:

ensembl_id ENSDART00000140474

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033282 lncRNA upstream 84346 36742343 ~ 36743912 (+) True XLOC_015712
TCONS_00031290 lncRNA upstream 180707 36646499 ~ 36647551 (+) True XLOC_015708
TCONS_00033612 lncRNA upstream 185496 36638931 ~ 36642762 (+) True XLOC_015707
TCONS_00033611 lncRNA upstream 244983 36521895 ~ 36583275 (+) True XLOC_015702
TCONS_00031301 lncRNA downstream 108451 36939942 ~ 36941479 (+) True XLOC_015717
TCONS_00031310 lncRNA downstream 345359 37176850 ~ 37182269 (+) False XLOC_015720
TCONS_00031311 lncRNA downstream 345392 37176883 ~ 37182269 (+) False XLOC_015720
TCONS_00031320 lncRNA downstream 413946 37245437 ~ 37258241 (+) True XLOC_015723
TCONS_00033613 lncRNA downstream 469917 37301408 ~ 37305390 (+) False XLOC_015725
TCONS_00031293 mRNA upstream 96295 36721357 ~ 36731963 (+) True XLOC_015711
TCONS_00031292 mRNA upstream 106969 36701322 ~ 36721289 (+) True XLOC_015710
TCONS_00031291 mRNA upstream 133114 36691771 ~ 36695144 (+) True XLOC_015709
TCONS_00031289 mRNA upstream 169102 36646451 ~ 36659156 (+) False XLOC_015708
TCONS_00031288 mRNA upstream 192399 36620011 ~ 36635859 (+) True XLOC_015706
TCONS_00031298 mRNA downstream 30982 36862473 ~ 36892883 (+) True XLOC_015715
TCONS_00031299 mRNA downstream 67491 36898982 ~ 36905195 (+) True XLOC_015716
TCONS_00031300 mRNA downstream 108258 36939749 ~ 36941988 (+) False XLOC_015717
TCONS_00031302 mRNA downstream 279013 37110504 ~ 37121162 (+) False XLOC_015718
TCONS_00031303 mRNA downstream 279088 37110579 ~ 37122351 (+) True XLOC_015718
TCONS_00031294 other upstream 74500 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031283 other upstream 703441 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 703976 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031281 other upstream 704327 36123871 ~ 36123931 (+) True XLOC_015699
TCONS_00031280 other upstream 705143 36123056 ~ 36123115 (+) True XLOC_015698
TCONS_00031307 other downstream 308983 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031312 other downstream 360950 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031331 other downstream 1005128 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 1043280 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031374 other downstream 3225408 40056899 ~ 40057016 (+) True XLOC_015768

Expression Profile

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