RNA id: TU410139


Basic Information

Item Value
RNA id TU410139
length 241
lncRNA type intronic
GC content 0.54
exon number 3
gene id G360969
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5250692 ~ 5251226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTAATcaggggctgatttagacctgggacaccaggtgagtgattcccctctaatcaggggctgatttagacctgggacaccaggtgggtgattcccctctaatcagggactgatttagacctgggacaccaggtgggtgattctcctctaatcaggggctgatttagacctgggacaccaggtgggtgattcccctctaatcaggggctgatttagacctgggacaccaggtgggtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410129 lncRNA upstream 23166 5226979 ~ 5227526 (+) True G360960
TU410128 lncRNA upstream 24589 5220433 ~ 5226103 (+) True G360959
TU410124 lncRNA upstream 47079 5202671 ~ 5203613 (+) True G360955
TU410088 lncRNA upstream 102445 5147380 ~ 5148247 (+) True G360927
TU410086 lncRNA upstream 102580 5146068 ~ 5148112 (+) True G360926
TU410144 lncRNA downstream 12263 5263489 ~ 5263778 (+) True G360973
TU410150 lncRNA downstream 21881 5273107 ~ 5273785 (+) True G360979
TU410152 lncRNA downstream 28264 5279490 ~ 5344153 (+) True G360980
TU409924 lncRNA downstream 82817 5334043 ~ 5338949 (+) False tcf4
TU409926 lncRNA downstream 82817 5334043 ~ 5339341 (+) False tcf4
XM_036976633.1 mRNA upstream 580107 4654146 ~ 4670585 (+) True LOC110523121
XM_036976624.1 mRNA upstream 651916 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA upstream 651916 4561352 ~ 4598776 (+) True LOC110523122
XM_036976626.1 mRNA upstream 652119 4561350 ~ 4598573 (+) False LOC110523122
XM_036976627.1 mRNA upstream 683662 4561350 ~ 4567030 (+) False LOC110523122
XM_036976648.1 mRNA downstream 166242 5417468 ~ 5458865 (+) False LOC110524934
XM_036976650.1 mRNA downstream 166242 5417468 ~ 5458865 (+) False LOC110524934
XM_036976647.1 mRNA downstream 166379 5417605 ~ 5458865 (+) False LOC110524934
XM_036976649.1 mRNA downstream 166379 5417605 ~ 5458865 (+) False LOC110524934
XM_036976651.1 mRNA downstream 166379 5417605 ~ 5458865 (+) False LOC110524934
TU409301 other upstream 602692 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 702836 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 830623 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 905175 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 1239336 4008748 ~ 4011356 (+) True G360121
TU410157 other downstream 45644 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 552602 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 552602 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1934700 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1934804 7186030 ~ 7189819 (+) True G362297

Expression Profile