RNA id: TU410157


Basic Information

Item Value
RNA id TU410157
length 415
RNA type TUCP
GC content 0.51
exon number 3
gene id G360985
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5296870 ~ 5299403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAGGTCCCCTCTCTATGATGACTACAGGTcccctctctacgatgactacaggtccCCTCTCTATGATGACTACAGGTCTCCTCTCTACAATGACTACAGGTCCCCTCTCTATgatgactacaggtctcatcatcacacagctcctctctacgatgactacaggtcccctctctacgatgactacagGTctcctctctacgatgactacaggtctcctctctacgatgactacaggtctcatcagcacacagcccctctctacgatgactacaggtctcatcatcacacagcccctctctacgatgactacaggtctcatcATCACACAGCTCCTCTCTATGATGACTACAGGTCTCATcagcacacagcccctctctacgatgactacaggtctcatcatcacacagcccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410150 lncRNA upstream 23085 5273107 ~ 5273785 (+) True G360979
TU410144 lncRNA upstream 33092 5263489 ~ 5263778 (+) True G360973
TU410139 lncRNA upstream 45644 5250692 ~ 5251226 (+) True G360969
TU410129 lncRNA upstream 69344 5226979 ~ 5227526 (+) True G360960
TU410128 lncRNA upstream 70767 5220433 ~ 5226103 (+) True G360959
TU409924 lncRNA downstream 34640 5334043 ~ 5338949 (+) False tcf4
TU409926 lncRNA downstream 34640 5334043 ~ 5339341 (+) False tcf4
TU409927 lncRNA downstream 34640 5334043 ~ 5338949 (+) True tcf4
TU410172 lncRNA downstream 44904 5344307 ~ 5344913 (+) True G361000
TU410530 lncRNA downstream 54256 5353659 ~ 5353986 (+) True G361285
XM_036976633.1 mRNA upstream 626285 4654146 ~ 4670585 (+) True LOC110523121
XM_036976624.1 mRNA upstream 698094 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA upstream 698094 4561352 ~ 4598776 (+) True LOC110523122
XM_036976626.1 mRNA upstream 698297 4561350 ~ 4598573 (+) False LOC110523122
XM_036976627.1 mRNA upstream 729840 4561350 ~ 4567030 (+) False LOC110523122
XM_036976648.1 mRNA downstream 118065 5417468 ~ 5458865 (+) False LOC110524934
XM_036976650.1 mRNA downstream 118065 5417468 ~ 5458865 (+) False LOC110524934
XM_036976647.1 mRNA downstream 118202 5417605 ~ 5458865 (+) False LOC110524934
XM_036976649.1 mRNA downstream 118202 5417605 ~ 5458865 (+) False LOC110524934
XM_036976651.1 mRNA downstream 118202 5417605 ~ 5458865 (+) False LOC110524934
TU409301 other upstream 648870 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 749014 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 876801 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 951353 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 1285514 4008748 ~ 4011356 (+) True G360121
TU411026 other downstream 504425 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 504425 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1886523 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1886627 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 2391037 7690440 ~ 7692514 (+) True G362554

Expression Profile