RNA id: TU410172


Basic Information

Item Value
RNA id TU410172
length 607
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G361000
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5344307 ~ 5344913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatctttccTTTTACCTAACTGTGACAACCTggtactttttcaaccactgTAAATAGAGTGTAAATATGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACAGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACCAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACGAGTTCAGAGTAGACGGAGTGTAAATACCAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410152 lncRNA upstream 154 5279490 ~ 5344153 (+) True G360980
TU409926 lncRNA upstream 4966 5334043 ~ 5339341 (+) False tcf4
TU409924 lncRNA upstream 5358 5334043 ~ 5338949 (+) False tcf4
TU409927 lncRNA upstream 5358 5334043 ~ 5338949 (+) True tcf4
TU410150 lncRNA upstream 70522 5273107 ~ 5273785 (+) True G360979
TU410530 lncRNA downstream 8746 5353659 ~ 5353986 (+) True G361285
TU410571 lncRNA downstream 42436 5387349 ~ 5387992 (+) True G361302
TU410593 lncRNA downstream 73627 5418540 ~ 5418969 (+) True G361316
TU410595 lncRNA downstream 76501 5421414 ~ 5506324 (+) True G361318
TU410623 lncRNA downstream 126164 5471077 ~ 5474621 (+) False G361339
XM_036976636.1 mRNA upstream 4968 4908459 ~ 5339339 (+) False tcf4
XM_036976640.1 mRNA upstream 4968 4909765 ~ 5339339 (+) False tcf4
XM_036976641.1 mRNA upstream 4968 4909765 ~ 5339339 (+) False tcf4
XM_036976637.1 mRNA upstream 4968 4909766 ~ 5339339 (+) False tcf4
XM_036976638.1 mRNA upstream 4968 4909766 ~ 5339339 (+) False tcf4
XM_036976648.1 mRNA downstream 72555 5417468 ~ 5458865 (+) False LOC110524934
XM_036976650.1 mRNA downstream 72555 5417468 ~ 5458865 (+) False LOC110524934
XM_036976647.1 mRNA downstream 72692 5417605 ~ 5458865 (+) False LOC110524934
XM_036976649.1 mRNA downstream 72692 5417605 ~ 5458865 (+) False LOC110524934
XM_036976651.1 mRNA downstream 72692 5417605 ~ 5458865 (+) False LOC110524934
TU410157 other upstream 44904 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 696307 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 796451 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 924238 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 998790 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 458915 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 458915 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1841013 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1841117 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 2345527 7690440 ~ 7692514 (+) True G362554

Expression Profile