RNA id: TU410530


Basic Information

Item Value
RNA id TU410530
length 328
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G361285
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5353659 ~ 5353986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtttgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccattcaatattatcgcttgcacagtgctccttgggatgtttaaagtttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatcttggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410172 lncRNA upstream 8746 5344307 ~ 5344913 (+) True G361000
TU410152 lncRNA upstream 9506 5279490 ~ 5344153 (+) True G360980
TU409926 lncRNA upstream 14318 5334043 ~ 5339341 (+) False tcf4
TU409924 lncRNA upstream 14710 5334043 ~ 5338949 (+) False tcf4
TU409927 lncRNA upstream 14710 5334043 ~ 5338949 (+) True tcf4
TU410571 lncRNA downstream 33363 5387349 ~ 5387992 (+) True G361302
TU410593 lncRNA downstream 64554 5418540 ~ 5418969 (+) True G361316
TU410595 lncRNA downstream 67428 5421414 ~ 5506324 (+) True G361318
TU410623 lncRNA downstream 117091 5471077 ~ 5474621 (+) False G361339
TU410624 lncRNA downstream 117091 5471077 ~ 5474621 (+) False G361339
XM_036976644.1 mRNA upstream 14320 4910189 ~ 5339339 (+) False tcf4
XM_036976648.1 mRNA downstream 63482 5417468 ~ 5458865 (+) False LOC110524934
XM_036976650.1 mRNA downstream 63482 5417468 ~ 5458865 (+) False LOC110524934
XM_036976647.1 mRNA downstream 63619 5417605 ~ 5458865 (+) False LOC110524934
XM_036976649.1 mRNA downstream 63619 5417605 ~ 5458865 (+) False LOC110524934
XM_036976651.1 mRNA downstream 63619 5417605 ~ 5458865 (+) False LOC110524934
TU410157 other upstream 54256 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 705659 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 805803 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 933590 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1008142 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 449842 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 449842 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1831940 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1832044 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 2336454 7690440 ~ 7692514 (+) True G362554

Expression Profile