RNA id: TU410593


Basic Information

Item Value
RNA id TU410593
length 282
lncRNA type intronic
GC content 0.41
exon number 3
gene id G361316
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5418540 ~ 5418969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtctctctctcttctctctccctctctctctctatttctctcttctgtctctctatctctctctctctctgtgtctctctctcttctctctctctctccctctctctctctatttctctcttctgtctctctctatttctctctctcttctcattctTCTTCCTTCAGACTGATATCTAAATTATTAGCCAAATAAGCCGTTAAATGTGTTGTCCTTTAACCATTGcatgtacacatacagtacatcaatcAGAAAAGGATGGTAGCTGCAGTAAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410571 lncRNA upstream 30548 5387349 ~ 5387992 (+) True G361302
TU410530 lncRNA upstream 64554 5353659 ~ 5353986 (+) True G361285
TU410172 lncRNA upstream 73627 5344307 ~ 5344913 (+) True G361000
TU409926 lncRNA upstream 79199 5334043 ~ 5339341 (+) False tcf4
TU409924 lncRNA upstream 79591 5334043 ~ 5338949 (+) False tcf4
TU410595 lncRNA downstream 2445 5421414 ~ 5506324 (+) True G361318
TU410623 lncRNA downstream 52108 5471077 ~ 5474621 (+) False G361339
TU410624 lncRNA downstream 52108 5471077 ~ 5474621 (+) False G361339
TU410625 lncRNA downstream 52108 5471077 ~ 5474621 (+) False G361339
TU410627 lncRNA downstream 52108 5471077 ~ 5474621 (+) True G361339
XM_036976644.1 mRNA upstream 79201 4910189 ~ 5339339 (+) False tcf4
LOC110524936 mRNA downstream 158045 5577014 ~ 5577940 (+) True LOC110524936
XM_036976655.1 mRNA downstream 253680 5672649 ~ 5760948 (+) True LOC110522836
XM_036976667.1 mRNA downstream 1069433 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 1069433 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 1069433 6488402 ~ 6555494 (+) False LOC110523126
TU410157 other upstream 119137 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 770540 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 870684 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 998471 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1073023 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 384859 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 384859 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1766957 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1767061 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 2271471 7690440 ~ 7692514 (+) True G362554

Expression Profile