RNA id: TU410625


Basic Information

Item Value
RNA id TU410625
length 3435
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G361339
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5471077 ~ 5474621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGTTTATTAAACACTAATTCCACATCAGTTATATACAGAACAGATACTACATTATGGACTTTTGTCTTGTCTTAAACACAATACTAGTTGTTAAcactgactgcctgtctgtcttggtCCCTATCTGCCATCATGTTATTATTGTGTTATAGAAAAGTTGAGGATGTTACATTCAGGTGGGGGGGTTGGGGGCAGTGGTTGTTGAACACTTGTGTTGTCACTAGCCAGGCCGTGCGAAGTGGAGTAAGTCCTGTAAACGCTGGTAGATGTGGCCATGCTACATTCCACAGCAACATCCTCACGGAACACAGAACTACATCTTGCGTGCACTAGCCAACTACTGTAGCTAGATTTGATGTTAAAAGTCTGTCACACGAGATTAGTAGCTAGGAATGTCAAAaaggccacagacagacagacacctctgACCtggttagatactactgcactgttggagctaggaacacaagcatttcgctacacccaaaATAATATAGgcaaaatatgtgtacgcgaccaattaattttggcacagacagacagacagacagacagaccaacagcatCATCATCAATGAGATATTTACTGCTTGGCGATGTATTTTCCTGACAGTAATATTATATCAGTCTTGACTGAGTGATATTACAATATCATAAAGTTGATCATACCTTACTGTCTTTTATGCACATTTAGCTATACACTGCAGTTGTCAAAAAGTACTGTTAAATGGGGGGGATCACATTTACTGTAAATTTAATGAGTGTGTTGAACCGTAATCTAACTGATTAGATttactgtaataataataataacaatctaatctaaaacaaaaaaaaagttaataaACATACAACTCTAGAATAGGAACTTTAAATTTAAAAATCATATATAAATAACTGATTTTAATATTGGTACCGTATGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTATGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTATGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTATGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGAACCGTACCGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTACGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTATGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTATGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTACCGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTATGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTACCGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGAACCGTACCGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTACGGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTTTAATATTGGTACCGTACCGATGGGGCCTTAGAAGCCAAGGCAGTAGATTAGATTGGACAAATACTTCTAAACAACATGAGGATATAAAGTCTTATAAAACATAGGCCTCCGGTAGGCCAGgcttttgtcccaaatggcaacctattccctatttataccacagcattgttgaatactcgtttctgattggctagaagggcattctagaatggGCATTAAAACCAAATATAGAAGACAGTTGGATGTCTCTGGGACATATTTATATGGGATACCTGATCATGGCGCATTATAAAGCACTCCACAAGCAGACTGTAGTTACAGAAAGATAAACCAACAACCACACAAACCGATATTGGATACATTGTAAACACAGGTCCAACAAGGAAAaacatagctaactagctagctagcattcatttatttttttttccACAGAGACCTCTGATGAACCTAACGTGGTGCGTGATGGGATGAACATACATTTTTCCCGGTCCTTCAATGTTGCAATCATGAAGCGAGTGGCGCTATGCTGTCGAACCCGCCCACTTTTCTATTTTTAACACCTGTTTTCAGCGACTGATATTGTTAAATTCCATTGGTCATATTGGCATGTTTGCTAGCAACAAACTGTTTGGCTACATTCAAGCCTAGTGTTTGACGTGTTCGATAAGGGCGGCAGCTAGCCTAGAAGTTAACCCGAAAGgtctctggttcgaatccccgagcggaCAAGGTGaacaacgtgcccttgagcaagagtGTCTGCCAAATGACTCAAAATGTAAATATGCAATGCGCTCTCCTCATAATGAACAGTGTGTCCTGACGCGAACGCAAACTATTCAATGCCAAAAtcgctcatcatcatcatcatcatcatcatcatcagctcattgttatggatgtctCCAAATGAATTGTCGCTAGAAAACAGCTCACGCAAACGCAGCTACTTTACCGTTATTCTGGCTGCAGAGGTTGACGTgattgtgtttaaaaaaaaaatagttcaATAGCTAGCAAGCAAGTCAGCAGGGCAACCGAATAAAAACGTCCATAGAAACAGAAAGACTGAGCAACCGAGTCGCATCTCTGGCAACGGACTAACAAATCAGGTTTCATGGGAGGATGGAAAAAAGTATTAATTTGACTTTTAATCAATTCAAAAAATATCCATGAAGACATTTCCACCAGATAATGTGTGCTTTAGTATTGTTTTCTTTGGCAACTGTGGTATAAGCGGGATAAACGCCTCCGTTCTGTACATTACCTAGGAGATAATGAACTCAGCTCGTCCCGCTGTCTTGTCCATTATGTCCAAGGCAATGTACATAGTGCACACCttataggctctggtcaaatgtaatgCCCTATGTAAGGGAACAAGGTGACAATTgggacacaatacaacacaacacaggacaggCAGGAGAGACACATAGCCAGGCCCAGCACAGTACACACAGGCCATGCAAGGCCAGAACCACAGCCCCATTGCAGTGTGGCTGACTTGAGCTGCCCCCTCACACATCATGCTGTGGCCACGCTGCTGCACTTCTGCGTCTGGCCACCAGAGGGCGCACTAGAGGACCAACCAGAGTAGGGAGAAGGGGACGTGGAAGAGGCCAAGTCTAACATGCACACTTCTTCTGGTCAGGCGCAGCGTCCTCCAGCTTGGTGGCTCCTCCCCCGTTGGCGGGATCGGCGGTGGGCTTGTCGACACACTGCTCCATCCTCTTCATGACCAGGTCTAGCAGAGTGATGACCGCCTTGTCCACCTCAGACCCCGTCGCTGCCGACGTCTCAAAGTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410593 lncRNA upstream 52108 5418540 ~ 5418969 (+) True G361316
TU410571 lncRNA upstream 83085 5387349 ~ 5387992 (+) True G361302
TU410530 lncRNA upstream 117091 5353659 ~ 5353986 (+) True G361285
TU410172 lncRNA upstream 126164 5344307 ~ 5344913 (+) True G361000
TU409927 lncRNA upstream 132128 5334043 ~ 5338949 (+) True tcf4
TU410654 lncRNA downstream 55356 5529977 ~ 5531508 (+) True G361365
TU410819 lncRNA downstream 94198 5568819 ~ 5570615 (+) True G361494
TU410821 lncRNA downstream 98311 5572932 ~ 5573148 (+) True G361496
TU410823 lncRNA downstream 101358 5575979 ~ 5576363 (+) True G361498
TU410834 lncRNA downstream 166340 5640961 ~ 5661068 (+) True G361509
XM_036976649.1 mRNA upstream 12212 5417605 ~ 5458865 (+) False LOC110524934
LOC110524936 mRNA downstream 102393 5577014 ~ 5577940 (+) True LOC110524936
XM_036976655.1 mRNA downstream 198028 5672649 ~ 5760948 (+) True LOC110522836
XM_036976667.1 mRNA downstream 1013781 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 1013781 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 1013781 6488402 ~ 6555494 (+) False LOC110523126
TU410157 other upstream 171674 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 823077 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 923221 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 1051008 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1125560 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 329207 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 329207 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1711305 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1711409 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 2215819 7690440 ~ 7692514 (+) True G362554

Expression Profile