RNA id: TU410896



Basic Information


Item Value
RNA id TU410896
length 286
lncRNA type intronic
GC content 0.52
exon number 2
gene id G361557
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5708301 ~ 5708696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggtctgtagtgactcctctaacactgagatgcagtgtcttagaccgctgaaccagggtctgtagtgacggctctaacactgagatgcagtgtcttagaccactgaaccagggtctgtagtgacggctctaacaccagggtgtctgtagtgacggctctaacactgagatgcagtgtcttagaccactgaaccagggtctgtagtgacggctcttgcactgagatgcagtgacttagaccactgaaccagggtcagtagtgactcctctaacactgagatgcagtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU410893 lncRNA upstream 8376 5699570 ~ 5699925 (+) True G361555
TU410890 lncRNA upstream 14230 5693212 ~ 5694071 (+) True G361552
TU410889 lncRNA upstream 17204 5690806 ~ 5691097 (+) True G361551
TU410885 lncRNA upstream 23703 5683968 ~ 5684598 (+) True G361547
TU410884 lncRNA upstream 24392 5682731 ~ 5683909 (+) True G361546
TU410908 lncRNA downstream 18239 5726935 ~ 5727990 (+) True G361566
TU410918 lncRNA downstream 40847 5749543 ~ 5749983 (+) True G361575
TU410877 lncRNA downstream 54567 5763263 ~ 5763615 (+) True G361541
TU410989 lncRNA downstream 59452 5768148 ~ 5768417 (+) True G361637
TU410991 lncRNA downstream 64834 5773530 ~ 5774132 (+) True G361639
LOC110524936 mRNA upstream 130361 5577014 ~ 5577940 (+) True LOC110524936
XM_036976651.1 mRNA upstream 249436 5417605 ~ 5458865 (+) False LOC110524934
XM_036976667.1 mRNA downstream 779706 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 779706 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 779706 6488402 ~ 6555494 (+) False LOC110523126
XM_036976670.1 mRNA downstream 779706 6488402 ~ 6555494 (+) False LOC110523126
XM_036976666.1 mRNA downstream 805133 6513829 ~ 6555494 (+) False LOC110523126
TU410157 other upstream 408898 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1060301 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1160445 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 1288232 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1362784 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 95132 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 95132 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1477230 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1477334 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1981744 7690440 ~ 7692514 (+) True G362554

Expression Profile