RNA id: TU410908



Basic Information


Item Value
RNA id TU410908
length 843
lncRNA type intronic
GC content 0.47
exon number 2
gene id G361566
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5726935 ~ 5727990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATCACCACATAGAACGACAAAACGACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAAACGACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATTCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACAACAAACGACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACGACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACAACAAACGACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAAACGACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACCACACAGCATCCCACAGAACAAGACTGTGACATCACCACATAGAACGACAAACGACACAGCATCCCACAGAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU410896 lncRNA upstream 18239 5708301 ~ 5708696 (+) True G361557
TU410893 lncRNA upstream 27010 5699570 ~ 5699925 (+) True G361555
TU410890 lncRNA upstream 32864 5693212 ~ 5694071 (+) True G361552
TU410889 lncRNA upstream 35838 5690806 ~ 5691097 (+) True G361551
TU410885 lncRNA upstream 42337 5683968 ~ 5684598 (+) True G361547
TU410918 lncRNA downstream 21553 5749543 ~ 5749983 (+) True G361575
TU410877 lncRNA downstream 35273 5763263 ~ 5763615 (+) True G361541
TU410989 lncRNA downstream 40158 5768148 ~ 5768417 (+) True G361637
TU410991 lncRNA downstream 45540 5773530 ~ 5774132 (+) True G361639
TU411004 lncRNA downstream 56969 5784959 ~ 5785294 (+) True G361652
LOC110524936 mRNA upstream 148995 5577014 ~ 5577940 (+) True LOC110524936
XM_036976651.1 mRNA upstream 268070 5417605 ~ 5458865 (+) False LOC110524934
XM_036976667.1 mRNA downstream 760412 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 760412 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 760412 6488402 ~ 6555494 (+) False LOC110523126
XM_036976670.1 mRNA downstream 760412 6488402 ~ 6555494 (+) False LOC110523126
XM_036976666.1 mRNA downstream 785839 6513829 ~ 6555494 (+) False LOC110523126
TU410157 other upstream 427532 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1078935 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1179079 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 1306866 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1381418 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 75838 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 75838 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1457936 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1458040 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1962450 7690440 ~ 7692514 (+) True G362554

Expression Profile