RNA id: TU410877


Basic Information

Item Value
RNA id TU410877
length 165
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G361541
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5763263 ~ 5763615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggaatagggtctatagtagtgtactatatagggaatagggtctatagtagtgtactatatagggaatagggtctatagtagtgtactatacagggaatagggtctatagtagtgtactatatagggaatagggtctatagtagtgtactatatagggaatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410918 lncRNA upstream 13280 5749543 ~ 5749983 (+) True G361575
TU410908 lncRNA upstream 35273 5726935 ~ 5727990 (+) True G361566
TU410896 lncRNA upstream 54567 5708301 ~ 5708696 (+) True G361557
TU410893 lncRNA upstream 63338 5699570 ~ 5699925 (+) True G361555
TU410890 lncRNA upstream 69192 5693212 ~ 5694071 (+) True G361552
TU410989 lncRNA downstream 4533 5768148 ~ 5768417 (+) True G361637
TU410991 lncRNA downstream 9915 5773530 ~ 5774132 (+) True G361639
TU411004 lncRNA downstream 21344 5784959 ~ 5785294 (+) True G361652
TU411017 lncRNA downstream 36916 5800531 ~ 5800818 (+) True G361665
TU411023 lncRNA downstream 40213 5803828 ~ 5859226 (+) False G361671
XM_036976655.1 mRNA upstream 2315 5672649 ~ 5760948 (+) True LOC110522836
LOC110524936 mRNA upstream 185323 5577014 ~ 5577940 (+) True LOC110524936
XM_036976651.1 mRNA upstream 304398 5417605 ~ 5458865 (+) False LOC110524934
XM_036976667.1 mRNA downstream 724787 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 724787 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 724787 6488402 ~ 6555494 (+) False LOC110523126
XM_036976670.1 mRNA downstream 724787 6488402 ~ 6555494 (+) False LOC110523126
XM_036976666.1 mRNA downstream 750214 6513829 ~ 6555494 (+) False LOC110523126
TU410157 other upstream 463860 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1115263 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1215407 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 1343194 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1417746 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 40213 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 40213 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1422311 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1422415 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1926825 7690440 ~ 7692514 (+) True G362554

Expression Profile