RNA id: TCONS_00031307


Basic Information

Item Value
RNA id TCONS_00031307
length 692
RNA type processed_transcript
GC content 0.48
exon number 6
gene id XLOC_015719
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37134281 ~ 37146572 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAGCAAGATGGCGTCAGCATCAGAGCACCAGGGGGCTCCAGACAGCGAATTGGACGAATTATTAGACAGTAAGGTGCTCTTGATGATTTTGACAAGACCAGTGTGCCACCTGTGGCCCCTGAAGCCCCCTCTGACCCTGATGCCGGTGCTAAGAGTAACGAGAAGcCTCCGCTACTGGAGGACAGTAAGTTCTTTGAATCTCTTTTTGAGGGTGAGATGGCCAACCAAGCACGTGAGGAGTGGGAAAAAGCCATGGCTGAGCTAGCACAAGAAGAACCTGATCTTCTACAGCATTTTCATAAGCTGTCTGAGGCAGCAGGAAAAGCACAGATGTAGCTTCACAACAAGAGTTCACCTCCTGTCTTAAAGAGACCCTTAATGGCTTGGCCAAAAATGCAGACAACTTGCAGAGTGCAGGACTGGCTGGAGATGATCTGGTAAAGACCCTGGAGAACATGGGATTGAATGAAAATGGGGAGGCAGGAGGAGAAGATGGCAATATTCTGCCAATTATGCAGTCCATCATGCAGAACCTTTTGTCCAAAGAAGTTCTGTACCCATCACTTAAAGAGATAACAGACAAGTACCCTGAATGGTTGGAGAGCAACCGGCAGTCCCTTCCTTCTGACCAATTCACGAGGTATGAGCAACAGTACAAGATAATGGGAGAGATATGCAACCAGTTTGAG

Function

GO:

id name namespace
GO:0045046 protein import into peroxisome membrane biological_process
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0033328 peroxisome membrane targeting sequence binding molecular_function

KEGG:

id description
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-050417-424 Predicted to enable peroxisome membrane targeting sequence binding activity. Predicted to be involved in protein import into peroxisome membrane. Predicted to act upstream of or within peroxisome organization. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 12A. Orthologous to human PEX19 (peroxisomal biogenesis factor 19).

Ensembl:

ensembl_id ENSDART00000146409

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031301 lncRNA upstream 198995 36939942 ~ 36941479 (+) True XLOC_015717
TCONS_00033282 lncRNA upstream 396562 36742343 ~ 36743912 (+) True XLOC_015712
TCONS_00031290 lncRNA upstream 492923 36646499 ~ 36647551 (+) True XLOC_015708
TCONS_00033612 lncRNA upstream 497712 36638931 ~ 36642762 (+) True XLOC_015707
TCONS_00033611 lncRNA upstream 557199 36521895 ~ 36583275 (+) True XLOC_015702
TCONS_00031310 lncRNA downstream 33233 37176850 ~ 37182269 (+) False XLOC_015720
TCONS_00031311 lncRNA downstream 33266 37176883 ~ 37182269 (+) False XLOC_015720
TCONS_00031320 lncRNA downstream 101820 37245437 ~ 37258241 (+) True XLOC_015723
TCONS_00033613 lncRNA downstream 157791 37301408 ~ 37305390 (+) False XLOC_015725
TCONS_00033614 lncRNA downstream 157807 37301424 ~ 37307571 (+) False XLOC_015725
TCONS_00031303 mRNA upstream 18123 37110579 ~ 37122351 (+) True XLOC_015718
TCONS_00031302 mRNA upstream 19312 37110504 ~ 37121162 (+) False XLOC_015718
TCONS_00031300 mRNA upstream 198486 36939749 ~ 36941988 (+) False XLOC_015717
TCONS_00031299 mRNA upstream 235279 36898982 ~ 36905195 (+) True XLOC_015716
TCONS_00031298 mRNA upstream 247591 36862473 ~ 36892883 (+) True XLOC_015715
TCONS_00031308 mRNA downstream 33197 37176814 ~ 37206080 (+) False XLOC_015720
TCONS_00031309 mRNA downstream 33200 37176817 ~ 37206072 (+) False XLOC_015720
TCONS_00031313 mRNA downstream 63844 37207461 ~ 37215989 (+) False XLOC_015721
TCONS_00031314 mRNA downstream 63848 37207465 ~ 37215955 (+) False XLOC_015721
TCONS_00031315 mRNA downstream 63858 37207475 ~ 37215962 (+) False XLOC_015721
TCONS_00031294 other upstream 386716 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031283 other upstream 1015657 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 1016192 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031281 other upstream 1016543 36123871 ~ 36123931 (+) True XLOC_015699
TCONS_00031280 other upstream 1017359 36123056 ~ 36123115 (+) True XLOC_015698
TCONS_00031312 other downstream 48824 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031331 other downstream 693002 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 731154 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031374 other downstream 2913282 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 3892459 41036076 ~ 41036191 (+) True XLOC_015775

Expression Profile

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