RNA id: TU411184


Basic Information

Item Value
RNA id TU411184
length 317
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G361771
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5993675 ~ 5993991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAGTATGAGTGCTGTGTTGTAAGGGCCCATATAGGCATGACTTTGGAGGACCCCATTCTGTGTAATGGCTGCACAGTGTGTTATATTACCCCCACTTTGCCCTGGGACATTGACTATAGCCCTGTGGCCATTGATGCTTCTTCCCCTCCTTCGTGTTCTCGTCAGGttgaacccagcctcatctacgtaAATGAACTCATGCTggatctcctctccatccattcgTAAAACTCTCAGAAAAACAGTGTCAGGCAAAATTGTGTAGTTCAGTGTAGATCTAGTatacatattacagtacagtaaaatatTGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411182 lncRNA upstream 436 5993025 ~ 5993239 (+) True G361769
TU411180 lncRNA upstream 2152 5990852 ~ 5991523 (+) True G361767
TU411179 lncRNA upstream 3712 5989561 ~ 5989963 (+) True G361766
TU411175 lncRNA upstream 7981 5985469 ~ 5985694 (+) True G361762
TU411082 lncRNA upstream 19392 5973859 ~ 5974283 (+) True G361715
TU411204 lncRNA downstream 3507 5997498 ~ 5998121 (+) True G361776
TU411196 lncRNA downstream 76815 6070806 ~ 6073670 (+) False G361774
TU411191 lncRNA downstream 78129 6072120 ~ 6075422 (+) False G361774
TU411190 lncRNA downstream 79740 6073731 ~ 6074340 (+) True G361774
TU411241 lncRNA downstream 81851 6075842 ~ 6131680 (+) True G361806
XM_036976655.1 mRNA upstream 232727 5672649 ~ 5760948 (+) True LOC110522836
LOC110524936 mRNA upstream 415735 5577014 ~ 5577940 (+) True LOC110524936
XM_036976652.1 mRNA upstream 534810 5417605 ~ 5458865 (+) False LOC110524934
XM_036976667.1 mRNA downstream 494411 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 494411 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 494411 6488402 ~ 6555494 (+) False LOC110523126
XM_036976670.1 mRNA downstream 494411 6488402 ~ 6555494 (+) False LOC110523126
XM_036976666.1 mRNA downstream 519838 6513829 ~ 6555494 (+) False LOC110523126
TU411026 other upstream 65749 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 152406 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 694272 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1345675 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1445819 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 1191935 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1192039 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1696449 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1924931 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 2781341 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile