RNA id: TU412983


Basic Information

Item Value
RNA id TU412983
length 1884
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G363294
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6090821 ~ 6092820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcactattattacacaatgtagaaaatagtacaaataaagaaaaacccttgaatgagtcggtgtgtccaaacttttgaccggtagtgtttTGAAAACACATTCCATCTCTAGAATACTGGAGATGTGTGGAACACTTGGCTCTCGCTGTGATTGGCTGCGGTTCAGGTGTAGTGTGAAGTTGTCCCTAGAAGGctaatcttgggtcagttttgcgtTTCCCTCACTTAATGGTTACGGTTGGAAGAGGGCAAGCTGATGGAGAAGCTGAGTGTCCTCCACCTCCTGCTCCTTTAATGGTCTTCCTGTCTGGAGGCTGCTAGCTACATACTTGCCTTGGCTAATGAATTCCCACCAATACACTGTTAGTGTACATGGAGCACTGTCTGTCATGGTGTGTGTATTGGAGAGCACGACCACCTCTTTAGTTGGATTAGGTTATGTCTGTATAGAGAAGGTTGTGaggcttccttccctctctccagatCTCTTGCTCTTCctaccttcctcccctccttGAGCCACAGCCAGTCTCTGTCATTAGGCTgaaccacagagacagacaggacccAGCCCCAAGCTTGGCCCCCAGCCACAGCAGCATGGAGTACACCAGGCAGACTGTAAACAGCGTtcaatggggatagctgctgGGCTCCcagtctgcctgtccgtctgtctgtctgctgcagCCTCATTTCCTGAGCAGTAGAGGAGACCCAACCCAGCACCAAAACTATTCCCCCCTGGTCCTGTGGATATCAAGGAGCCTTGTGAAATCTGGCTTTTGTGTTTTGACTGAGTGACAAAGATGTTTTACATGTTGTTTTAATAAAGAGGACCAAGTAGTGtggtttgtttgttgttgtttttttggggactttttatttatttaatgtattttttttgcttGGCTGAAATGTTTCTCCAATTTTTAAAGTTTAAAAGCTGAAACAAAAAGTTTGACACGTGAATGCAATGTTACTCCTGAGTCTTGATGAAATGTAGCTTCCTGCAGAGTTTCTTTCCTAAATGTCAACACATTCTGTGAAATTTCTCCCTGCTTGCATGAATGAAATCTTTTACAATCcaattctttattttattttgaattaaTTAATTCTATTgctcttttttttgtttgtctttttgttgttgttgttgttgttgttgttgttgttgaatataTCTATCTCTTTTCATTCTTCTGTATTACCGGACAGGAGATTTCAGTTCTGCTATAGCTCAACTGCAGCTAGGACCAATACAGACctaccctacctctctctctctctctcttctctacactCCCTCTGTGCTGAAACACAAACTGGCGCTCCTGCTTTAAGTATCCTATTGATCTGTCAGCGTCTGGAGCTCCTCTTAAATAGAgagacgtaaaaaaaaaaaaggacttCAACGTCCGTTTATTTGATTTGGCTGTAACATCATCTAGTGTGTTGCCagtgagatgatgatgatgggggtgGTGATGAAGATCATGACGTTGGGGGTGGTGATGAAGATCATGACGATGGGGGTGGTGATGAAGATCATGACGTTGGGGGTGGTGATGAAGATCATGACGTTGGGGGTGGTGATGAAGATCATGACGATGGGGGTGGTGATGAAGATCATGACGTTGGGGGTGGTGATGATGATATTGATCTAGCTtccctactgtctctgtgttgtagtttgGCTCTGAAGGTGCTCTGTGACTGTACCTGTGACTGTCGTGTTCCTGCCGTGCATATGTGCTTTCGATCGTTCAcctaataatatattatattgatgAAGACGTACTGTAATGTCTGtgttaaaacaaaaacactattgTGTTTGGCTTCTGTGTTCAATAAAAATGATATGTCTGGACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412973 lncRNA downstream 47739 6020382 ~ 6043082 (-) True G363287
TU411176 lncRNA downstream 105118 5985362 ~ 5985703 (-) True G361763
TU411167 lncRNA downstream 111750 5978478 ~ 5979071 (-) True G361755
TU411161 lncRNA downstream 128869 5961751 ~ 5961952 (-) True G361750
TU411119 lncRNA downstream 147525 5938849 ~ 5943296 (-) True G361719
TU413020 lncRNA upstream 14172 6106992 ~ 6111412 (-) True G363317
TU413025 lncRNA upstream 32805 6125625 ~ 6126067 (-) True G363322
TU413053 lncRNA upstream 89544 6182364 ~ 6182861 (-) True G363346
TU413066 lncRNA upstream 102619 6195439 ~ 6196151 (-) False G363357
TU413067 lncRNA upstream 102619 6195439 ~ 6196151 (-) True G363357
XM_021601535.2 mRNA downstream 136134 5945164 ~ 5954687 (-) False LOC110523123
XM_036976653.1 mRNA downstream 526456 5471029 ~ 5564365 (-) True LOC110524935
XM_036976654.1 mRNA downstream 580157 5471029 ~ 5510664 (-) False LOC110524935
XM_021601530.2 mRNA downstream 1442869 4639020 ~ 4647952 (-) True nars1
XM_036976632.1 mRNA downstream 1452719 4625085 ~ 4638102 (-) True fech
XM_036976659.1 mRNA upstream 1149 6093969 ~ 6420502 (-) False LOC110523124
XM_036976660.1 mRNA upstream 1149 6093969 ~ 6420556 (-) False LOC110523124
XM_036976658.1 mRNA upstream 1149 6093969 ~ 6436846 (-) False LOC110523124
XM_036976656.1 mRNA upstream 1149 6093969 ~ 6436847 (-) False LOC110523124
XR_005051629.1 mRNA upstream 1149 6093969 ~ 6436847 (-) False LOC110523124
TU411115 other downstream 136570 5945472 ~ 5954251 (-) True LOC110523123
TU410365 other downstream 1008953 5080578 ~ 5081868 (-) False G361170
TU410367 other downstream 1008953 5080578 ~ 5081868 (-) False G361170
TU409811 other downstream 1351119 4738312 ~ 4739702 (-) True G360703
TU409699 other downstream 1539894 4550346 ~ 4550927 (-) True G360610
TU413187 other upstream 450855 6543675 ~ 6554715 (-) False G363470
TU413188 other upstream 450855 6543675 ~ 6551674 (-) True G363470
TU413195 other upstream 509185 6602005 ~ 6725980 (-) True LOC110524941
TU414159 other upstream 2210447 8303267 ~ 8304183 (-) True G364322
TU414654 other upstream 2954722 9047542 ~ 9050708 (-) False G364754

Expression Profile