RNA id: TCONS_00031311


Basic Information

Item Value
RNA id TCONS_00031311
length 791
lncRNA type retained_intron
GC content 0.46
exon number 6
gene id XLOC_015720
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37176814 ~ 37206080 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGGATGATTTTAGGCTTCTAATTCGCATAAACGGATCAATATCTTCACACATAACACATTCCTGTTAATTTTACATTATCAGTGGAGATGTTGACCAAATTTGAGACAAAGTCGGCCCGAGTGAAAGGGCTGAGTTTCCATCCAAAGCGGCCCTGGATACTCGCTAGTTTGCACAATGGTGTCATCCAGCTGTGGGATTATCGCATGTGCACTCTAATCGACAAGTTTGATGAACACGATGGTCCAGTCAGAGGTATTGACTTTCATAAGCAGCAGCCTCTGTTTGTGTCTGGAGGAGATGACTACAAGATCAAGGTTTGGAACTACAAGCTGCGTCGATGTCTTTTCACTCTTCTTGGACATCTTGACTACATTCGCACCACATTCTTCCACCATGAGTACCCCTGGATCTTGAGTGCTTCAGATGATCAGACTATTCGTATTTGGAACTGGCAGTCCAGGACGTGTGTCTGTGTGCTGACGGGACATAATCATTATGTGATGTGCGCACAGTTCCATCCCTCTGAGGACCTGGTGGTGTCGGCAAGCTTGGATCAGACTGTGCGCGTGTGGGATATTTCCGGTGAGGAGGCTTGGAACAGGATTGAGTGTTTTGGGAAGGTTGGGGAGGTGGGAATGCAGAAAGAGAAGATGGAGGAAGATGAAGGCAGCTTTATGTCATTGTCTTCCTCATGTCCTCTTTTTACATTGTGTAGAGAACAAAACTCTGTGGGCTCAAAGCAAAAATACCTCTAATGTTTGTCTTGTGATTTGATCGATATATCCTTG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0061053 somite development biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04016 MAPK signaling pathway - plant
ko04978 Mineral absorption
ko01524 Platinum drug resistance
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-020905-2 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

Ensembl:

ensembl_id ENSDART00000138874

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031301 lncRNA upstream 235404 36939942 ~ 36941479 (+) True XLOC_015717
TCONS_00033282 lncRNA upstream 432971 36742343 ~ 36743912 (+) True XLOC_015712
TCONS_00031290 lncRNA upstream 529332 36646499 ~ 36647551 (+) True XLOC_015708
TCONS_00033612 lncRNA upstream 534121 36638931 ~ 36642762 (+) True XLOC_015707
TCONS_00033281 lncRNA upstream 612410 36552692 ~ 36564473 (+) True XLOC_015705
TCONS_00031320 lncRNA downstream 63168 37245437 ~ 37258241 (+) True XLOC_015723
TCONS_00033613 lncRNA downstream 119139 37301408 ~ 37305390 (+) False XLOC_015725
TCONS_00033614 lncRNA downstream 119155 37301424 ~ 37307571 (+) False XLOC_015725
TCONS_00033615 lncRNA downstream 119253 37301522 ~ 37307571 (+) False XLOC_015725
TCONS_00033616 lncRNA downstream 119273 37301542 ~ 37307571 (+) True XLOC_015725
TCONS_00031304 mRNA upstream 30311 37134281 ~ 37146572 (+) False XLOC_015719
TCONS_00031305 mRNA upstream 30730 37140448 ~ 37146153 (+) False XLOC_015719
TCONS_00031306 mRNA upstream 33584 37140453 ~ 37143299 (+) False XLOC_015719
TCONS_00031303 mRNA upstream 54532 37110579 ~ 37122351 (+) True XLOC_015718
TCONS_00031302 mRNA upstream 55721 37110504 ~ 37121162 (+) False XLOC_015718
TCONS_00031313 mRNA downstream 25192 37207461 ~ 37215989 (+) False XLOC_015721
TCONS_00031314 mRNA downstream 25196 37207465 ~ 37215955 (+) False XLOC_015721
TCONS_00031315 mRNA downstream 25206 37207475 ~ 37215962 (+) False XLOC_015721
TCONS_00031316 mRNA downstream 25209 37207478 ~ 37215879 (+) True XLOC_015721
TCONS_00031317 mRNA downstream 44742 37227011 ~ 37242537 (+) False XLOC_015722
TCONS_00031307 other upstream 33266 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 423125 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031283 other upstream 1052066 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 1052601 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031281 other upstream 1052952 36123871 ~ 36123931 (+) True XLOC_015699
TCONS_00031312 other downstream 10172 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031331 other downstream 654350 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 692502 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031374 other downstream 2874630 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 3853807 41036076 ~ 41036191 (+) True XLOC_015775

Expression Profile

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