RNA id: TU413020


Basic Information

Item Value
RNA id TU413020
length 871
lncRNA type intronic
GC content 0.39
exon number 2
gene id G363317
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6106992 ~ 6111412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgattatgtatcaggtaaaggtgttgtaggacacaaCAGGTGTGACTACAGGGTTATAGTTGATTCTGTATCAGataaaggtgttgtaggacacagcaggtgtcCTCTACAGTGATCTGCAGGACATGTGTGTTCTACTGACCAGCAGACTGACCCAGGggcctgacagaggagagagcagcGTTATCCTGTCAAGCTGTTGCAGTGCACCCTGGGTACTCGGCTGATGGTCATTGAAATCAAATAGTCGTTTTCTACCCTCCCAAATCTAAACCAACACAGTTCAGAAAACACCTGCTACCCAGTCAGATTTTAGAAAATGGGGAAATGGCGTTTGACTCGAGAGAAAATCAATATGCTGGGAGACGCAGTAAACAGCAGCTAAATAATTCAATAGAAAATATGTGTACAGTTGGATAAGAGcagaaaacactacacacacacacacacacacacacacacacacacacacacacacacacaggtggataTTATACATTTACCAAAACATCTGTTTTTAGGAGCAGCAGATCAATAAGGGAGACCGGTCTACTTCCAGACTTCAGAAGTCAACAGACTTTGTAGGTAATAGAAAATACCGGTCTCACACCCAGCATttagagagattatagtaacagtatttagagagagattatagtaacagtatttagagagagattatagtaacagtgtttagagattatagtaacagtatttagagagagattatagtaacagtatttagagattatagtaacagtatttagagagagattatagtaacagtagttagatagagattatagtaacagtatttagagattatagtaacagtatttagagattatagtaacagtatttagagagag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412982 lncRNA downstream 14172 6090821 ~ 6092820 (-) False G363294
TU412983 lncRNA downstream 14172 6090821 ~ 6092820 (-) False G363294
TU412986 lncRNA downstream 14172 6090821 ~ 6092820 (-) False G363294
TU412981 lncRNA downstream 14172 6091128 ~ 6092820 (-) False G363294
TU412984 lncRNA downstream 14172 6091128 ~ 6092820 (-) True G363294
TU413025 lncRNA upstream 14213 6125625 ~ 6126067 (-) True G363322
TU413053 lncRNA upstream 70952 6182364 ~ 6182861 (-) True G363346
TU413066 lncRNA upstream 84027 6195439 ~ 6196151 (-) False G363357
TU413067 lncRNA upstream 84027 6195439 ~ 6196151 (-) True G363357
TU413071 lncRNA upstream 90317 6201729 ~ 6202000 (-) True G363360
XM_021601535.2 mRNA downstream 152305 5945164 ~ 5954687 (-) False LOC110523123
XM_036976653.1 mRNA downstream 542627 5471029 ~ 5564365 (-) True LOC110524935
XM_036976654.1 mRNA downstream 596328 5471029 ~ 5510664 (-) False LOC110524935
XM_021601530.2 mRNA downstream 1459040 4639020 ~ 4647952 (-) True nars1
XM_036976632.1 mRNA downstream 1468890 4625085 ~ 4638102 (-) True fech
XM_036976664.1 mRNA upstream 325854 6437266 ~ 6484285 (-) False LOC110524940
XM_036976662.1 mRNA upstream 325854 6437266 ~ 6484287 (-) False LOC110524940
XM_036976663.1 mRNA upstream 325854 6437266 ~ 6484288 (-) False LOC110524940
XM_036976661.1 mRNA upstream 325854 6437266 ~ 6484290 (-) True LOC110524940
XM_021601542.2 mRNA upstream 393969 6505381 ~ 6510017 (-) True LOC110523127
TU411115 other downstream 152741 5945472 ~ 5954251 (-) True LOC110523123
TU410365 other downstream 1025124 5080578 ~ 5081868 (-) False G361170
TU410367 other downstream 1025124 5080578 ~ 5081868 (-) False G361170
TU409811 other downstream 1367290 4738312 ~ 4739702 (-) True G360703
TU409699 other downstream 1556065 4550346 ~ 4550927 (-) True G360610
TU413187 other upstream 432263 6543675 ~ 6554715 (-) False G363470
TU413188 other upstream 432263 6543675 ~ 6551674 (-) True G363470
TU413195 other upstream 490593 6602005 ~ 6725980 (-) True LOC110524941
TU414159 other upstream 2191855 8303267 ~ 8304183 (-) True G364322
TU414654 other upstream 2936130 9047542 ~ 9050708 (-) False G364754

Expression Profile