RNA id: TU411285


Basic Information

Item Value
RNA id TU411285
length 295
lncRNA type intronic
GC content 0.43
exon number 2
gene id G361849
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6178087 ~ 6178509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtatgtatgtatgtatgtatgtatgtatgtgtgtgtgtatgaatgtgtatgtacgtgtgtgtgtacgtgtgtgtgtgtgtgtatgtatgtgtgtgtatgtatgtatgtatgtatgtgtctgtgtgtatgaatgtgtatgtacatgtgtgtacgtgtgtgtgtgtatgaacgtgtgtgtacgtgtgagtgtgtgtgtgtacgtgtgtgtgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411263 lncRNA upstream 40784 6136169 ~ 6137303 (+) False G361828
TU411264 lncRNA upstream 41143 6136169 ~ 6136944 (+) True G361828
TU411241 lncRNA upstream 46407 6075842 ~ 6131680 (+) True G361806
TU411258 lncRNA upstream 46861 6130521 ~ 6131226 (+) True G361823
TU411255 lncRNA upstream 52034 6125698 ~ 6126053 (+) True G361820
TU411304 lncRNA downstream 27564 6206073 ~ 6206713 (+) True G361861
TU411308 lncRNA downstream 35512 6214021 ~ 6214605 (+) True G361865
TU411323 lncRNA downstream 64522 6243031 ~ 6243288 (+) True G361879
TU411367 lncRNA downstream 157676 6336185 ~ 6337229 (+) True G361919
TU411402 lncRNA downstream 207790 6386299 ~ 6386625 (+) True G361947
XM_036976655.1 mRNA upstream 417139 5672649 ~ 5760948 (+) True LOC110522836
LOC110524936 mRNA upstream 600147 5577014 ~ 5577940 (+) True LOC110524936
XM_036976652.1 mRNA upstream 719222 5417605 ~ 5458865 (+) False LOC110524934
XM_036976667.1 mRNA downstream 309893 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 309893 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 309893 6488402 ~ 6555494 (+) False LOC110523126
XM_036976670.1 mRNA downstream 309893 6488402 ~ 6555494 (+) False LOC110523126
XM_036976666.1 mRNA downstream 335320 6513829 ~ 6555494 (+) False LOC110523126
TU411026 other upstream 250161 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 336818 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 878684 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1530087 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1630231 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 1007417 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1007521 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1511931 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1740413 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 2596823 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile