RNA id: TCONS_00031312


Basic Information

Item Value
RNA id TCONS_00031312
length 784
RNA type processed_transcript
GC content 0.53
exon number 7
gene id XLOC_015720
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37176814 ~ 37206080 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATCATGATCTGCAACAAGAAGTTAGAGAGTCTCTGCAACATCCATGAGAACATCCGGGTGAAGAGTGGAGCCTGGGCTGAGAATGAAGTCTTCATCTACACCACCTCCAACCATATCAAATATGCTCTGACTTCTGGCGATCATGGTATAATCCGTACATTGGATCTGCCCATCTATGTGACAAGAGTGAGGGGTAACAGTGTTTATTGCCTGGATCGGGAGTGCAGACCACGTGTGCCAGAGGTGGACCCCAACGCTCAACTGCTGCAGCCTCCACCTCCCATCAACCCTCTGGACACAAACTGGCCTTTGCTCACAGTCTCCAAGGGCTTCTTTGAGGGAGCTATCGCTGCCAAAGGACGAGCAGGGCAGATGGTTGCTGATCTGGACATGGATGCTCCAGGAGGAGAAGGGTGGGGAGAAGATGCAGAACTTCATTTGGATGAAGACGGCTTCATGGATGCTCAGGAGGGACTGGGTGATGAGGGAGCCATTGGGAAAGACGACGGAGGAGGCTGGGATGTTGAAGAAGATCTGGATCTCCCACCAGAGCTGGACGTACCTTCTGTTGGTGGAGGTGGCGCAGAGGGTGAAGGCTTCTTTGTGCCACCCACTAAGGGCACAAGCCCAACCCAGATGTGGTGCAACAACTCTCAGCTGTCAGTGGATCACATACTGGCTGGCTCTTTTGAGACTGCTATGAGGTTGCTACATGACCAGGTTGGCGTTGTTCAGTTTGGGCCGTATAAGCAGCTCTTCATGCAGACTTTGTCCCGCGGCCG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0061053 somite development biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04016 MAPK signaling pathway - plant
ko04978 Mineral absorption
ko01524 Platinum drug resistance
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-020905-2 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

Ensembl:

ensembl_id ENSDART00000111382

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031310 lncRNA upstream 10172 37176850 ~ 37182269 (+) False XLOC_015720
TCONS_00031311 lncRNA upstream 10172 37176883 ~ 37182269 (+) False XLOC_015720
TCONS_00031301 lncRNA upstream 250962 36939942 ~ 36941479 (+) True XLOC_015717
TCONS_00033282 lncRNA upstream 448529 36742343 ~ 36743912 (+) True XLOC_015712
TCONS_00031290 lncRNA upstream 544890 36646499 ~ 36647551 (+) True XLOC_015708
TCONS_00031320 lncRNA downstream 43850 37245437 ~ 37258241 (+) True XLOC_015723
TCONS_00033613 lncRNA downstream 99821 37301408 ~ 37305390 (+) False XLOC_015725
TCONS_00033614 lncRNA downstream 99837 37301424 ~ 37307571 (+) False XLOC_015725
TCONS_00033615 lncRNA downstream 99935 37301522 ~ 37307571 (+) False XLOC_015725
TCONS_00033616 lncRNA downstream 99955 37301542 ~ 37307571 (+) True XLOC_015725
TCONS_00031304 mRNA upstream 45869 37134281 ~ 37146572 (+) False XLOC_015719
TCONS_00031305 mRNA upstream 46288 37140448 ~ 37146153 (+) False XLOC_015719
TCONS_00031306 mRNA upstream 49142 37140453 ~ 37143299 (+) False XLOC_015719
TCONS_00031303 mRNA upstream 70090 37110579 ~ 37122351 (+) True XLOC_015718
TCONS_00031302 mRNA upstream 71279 37110504 ~ 37121162 (+) False XLOC_015718
TCONS_00031313 mRNA downstream 5874 37207461 ~ 37215989 (+) False XLOC_015721
TCONS_00031314 mRNA downstream 5878 37207465 ~ 37215955 (+) False XLOC_015721
TCONS_00031315 mRNA downstream 5888 37207475 ~ 37215962 (+) False XLOC_015721
TCONS_00031316 mRNA downstream 5891 37207478 ~ 37215879 (+) True XLOC_015721
TCONS_00031317 mRNA downstream 25424 37227011 ~ 37242537 (+) False XLOC_015722
TCONS_00031307 other upstream 48824 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 438683 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031283 other upstream 1067624 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 1068159 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031281 other upstream 1068510 36123871 ~ 36123931 (+) True XLOC_015699
TCONS_00031331 other downstream 635032 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 673184 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031374 other downstream 2855312 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 3834489 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 5222097 42423684 ~ 42423799 (+) True XLOC_015799