RNA id: TCONS_00031313


Basic Information

Item Value
RNA id TCONS_00031313
length 1081
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_015721
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37207461 ~ 37215989 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGCCGGGAGCCATTGAAAGACGCTGTTGACACGAGGCCAAACAAACGCTACACTTCAGTTTTAAGCCGCGAAGGAGTGAGccacGAGGAGCTTATAAAATGTACCAAAAATAGTCACAGACTCGAGGCAAGCGTTTTCGCATGGTTTTGATGCCCTGGTTCCCCAAACCTCTAATAATGAGGTTATGTCAGTTGAGGAGGTGGAGTTAGTGATATAACAAATCAATCGTCTATAAATACTGAAGTTGGTCAGAAGTTGTCACAGTTCTCCACCTTGAACACAAGCTTCACTCGTGAGTCCAAACAGGTTGAAACAGAGAGAATGCAGGCTCTTCAGGTTGTGTCTCTGACTCTGCTGGCAGTACTGGCAGTCAGCGCTCAGTCCATCGGCTCTGGAAAATGTCCTCAGCCCCCTGTTCAGAAAGACTTTGATCCCACCAGGTACATGGGCAGATGGCATGAGATCATGAAGTTCCCTTCACCATTCCAGTTGGGCGAGTGCTGTCAGGCCACTTACACCCTGAGTGACGGCATCGTCCTGGTCCGAAATGATGAGATTCTCTCTAATGGCACCATCAGCTTCATTGAGGGAACTGCCAAGATTGTAGATGCCTCAGAGCCTGCCAAACTTGAAGTCAGCTTCTTTGAAGATGCTCCTCCTTCACCATACTGGGTTCTGGCTACTGATTATGATGACTACACCCTGGTTTACTCCTGCACTGATTTTGGCAATCTCTTCCATGCTGAGTATTCCTGGATCTTGAGTCGGAGCCGCACACTTAATAAGGAGACTATCTCTGAGCTGTTGGACATCCTCAAATCCCATGGCATCGGTACTGAGGCTTTCACTGAGACCGACCAGAGACCGGAGCTGTGCAGCAGCATGCCCTAAAGCAACTGCCTTCTGCAGTCTACTACTGTAAATGTGCTTTGTCTGTATATGCTGTACTCGCACAGCACGAGAATATGGAGAAAATGTGAATGGTATCTACCTAATTCTATGAGAAGTACTAAAGCTGTTCCTTACTCAGCATTAATTAAACTTTGAATAAAGAAcaagatataaatattgtcaaaTA

Function

GO:

id name namespace
GO:0000302 response to reactive oxygen species biological_process
GO:0006629 lipid metabolic process biological_process
GO:0007568 aging biological_process
GO:0006869 lipid transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-551 Predicted to enable lipid binding activity. Predicted to be involved in lipid metabolic process and response to reactive oxygen species. Predicted to act upstream of or within aging and lipid transport. Predicted to be located in extracellular region. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human APOD (apolipoprotein D).

Ensembl:

ensembl_id ENSDART00000138952

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031310 lncRNA upstream 25192 37176850 ~ 37182269 (+) False XLOC_015720
TCONS_00031311 lncRNA upstream 25192 37176883 ~ 37182269 (+) False XLOC_015720
TCONS_00031301 lncRNA upstream 265982 36939942 ~ 36941479 (+) True XLOC_015717
TCONS_00033282 lncRNA upstream 463549 36742343 ~ 36743912 (+) True XLOC_015712
TCONS_00031290 lncRNA upstream 559910 36646499 ~ 36647551 (+) True XLOC_015708
TCONS_00031320 lncRNA downstream 29448 37245437 ~ 37258241 (+) True XLOC_015723
TCONS_00033613 lncRNA downstream 85419 37301408 ~ 37305390 (+) False XLOC_015725
TCONS_00033614 lncRNA downstream 85435 37301424 ~ 37307571 (+) False XLOC_015725
TCONS_00033615 lncRNA downstream 85533 37301522 ~ 37307571 (+) False XLOC_015725
TCONS_00033616 lncRNA downstream 85553 37301542 ~ 37307571 (+) True XLOC_015725
TCONS_00031308 mRNA upstream 1381 37176814 ~ 37206080 (+) False XLOC_015720
TCONS_00031309 mRNA upstream 1389 37176817 ~ 37206072 (+) False XLOC_015720
TCONS_00031304 mRNA upstream 60889 37134281 ~ 37146572 (+) False XLOC_015719
TCONS_00031305 mRNA upstream 61308 37140448 ~ 37146153 (+) False XLOC_015719
TCONS_00031306 mRNA upstream 64162 37140453 ~ 37143299 (+) False XLOC_015719
TCONS_00031317 mRNA downstream 11022 37227011 ~ 37242537 (+) False XLOC_015722
TCONS_00031318 mRNA downstream 11129 37227118 ~ 37242307 (+) True XLOC_015722
TCONS_00031319 mRNA downstream 29393 37245382 ~ 37265903 (+) False XLOC_015723
TCONS_00031321 mRNA downstream 79099 37295088 ~ 37296159 (+) True XLOC_015724
TCONS_00031322 mRNA downstream 208272 37424261 ~ 37428875 (+) True XLOC_015726
TCONS_00031312 other upstream 5874 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031307 other upstream 63844 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 453703 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031283 other upstream 1082644 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 1083179 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031331 other downstream 620630 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 658782 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031374 other downstream 2840910 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 3820087 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 5207695 42423684 ~ 42423799 (+) True XLOC_015799

Expression Profile

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