RNA id: TU411429


Basic Information

Item Value
RNA id TU411429
length 319
lncRNA type intronic
GC content 0.37
exon number 2
gene id G361974
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6443918 ~ 6444647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGGAAATATTGAATAAATAGTTAATGTTAATGTCATCAATACACATTTAATCCATCAAGAGGCAAACTCGGTGAAGTAGCAGCTCAAGATGTTATCTCAGTCATTAAATCAACAGCAACACATTGTTGGGAGGTAAACATGGTTTTAAATCAACAGCAACACATTGTTGGGAGGTAAACATGGTTTTAAATCAACAGAAACACATTGTTGGGAGGTAAACATGGTTTTAAATCAACAGAAACACATTGTTGGGAGGTAAACATGGTTTTAAATCAACAGTAACACATTGTTGGGAGGTAAACATGGGCTGCAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411402 lncRNA upstream 57293 6386299 ~ 6386625 (+) True G361947
TU411367 lncRNA upstream 106689 6336185 ~ 6337229 (+) True G361919
TU411323 lncRNA upstream 200630 6243031 ~ 6243288 (+) True G361879
TU411308 lncRNA upstream 229313 6214021 ~ 6214605 (+) True G361865
TU411304 lncRNA upstream 237205 6206073 ~ 6206713 (+) True G361861
TU411434 lncRNA downstream 5513 6450160 ~ 6487973 (+) True G361977
TU411398 lncRNA downstream 43799 6488446 ~ 6504537 (+) True LOC110523126
TU411468 lncRNA downstream 117890 6562537 ~ 6563889 (+) True G362011
TU411476 lncRNA downstream 137058 6581705 ~ 6581982 (+) True G362019
TU411503 lncRNA downstream 189546 6634193 ~ 6634797 (+) True G362045
XM_036976655.1 mRNA upstream 682970 5672649 ~ 5760948 (+) True LOC110522836
LOC110524936 mRNA upstream 865978 5577014 ~ 5577940 (+) True LOC110524936
XM_036976652.1 mRNA upstream 985053 5417605 ~ 5458865 (+) False LOC110524934
XM_036976667.1 mRNA downstream 43755 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 43755 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 43755 6488402 ~ 6555494 (+) False LOC110523126
XM_036976670.1 mRNA downstream 43755 6488402 ~ 6555494 (+) False LOC110523126
XM_036976666.1 mRNA downstream 69182 6513829 ~ 6555494 (+) False LOC110523126
TU411026 other upstream 515992 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 602649 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1144515 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 1795918 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1896062 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 741279 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 741383 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 1245793 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1474275 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 2330685 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile