RNA id: TU411514


Basic Information

Item Value
RNA id TU411514
length 564
lncRNA type intronic
GC content 0.41
exon number 2
gene id G362053
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6693119 ~ 6694681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgcgacctggccaagataaggcatagcagtgtgaacagacaacacagagttacacatggagtaaacaattaacaagtcaataacacagtagaaaaaaggggagtctatatatacacattgtgtgcaaaaggcatgagaaggtaggcaaataattacaattatgcagattaacactggagtgataaatgatcagatggttatgtacaggtagagatattggtgtgcaaaagagcagaaaaataaataaataaaaacagtatggggatgaggtaggtgaaaatgggtgggctatttaccaatagactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttgaagttggtgagggagataaaagtctccaacttcagcgatttttgcaattcgttccagtcacaggcagcagagaactggaacgaaaggcggccaaatgaggtgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411503 lncRNA upstream 58322 6634193 ~ 6634797 (+) True G362045
TU411476 lncRNA upstream 111137 6581705 ~ 6581982 (+) True G362019
TU411468 lncRNA upstream 129230 6562537 ~ 6563889 (+) True G362011
TU411398 lncRNA upstream 188582 6488446 ~ 6504537 (+) True LOC110523126
TU411434 lncRNA upstream 205146 6450160 ~ 6487973 (+) True G361977
TU411541 lncRNA downstream 23729 6718410 ~ 6718720 (+) True G362079
TU411555 lncRNA downstream 45724 6740405 ~ 6740634 (+) True G362092
TU411558 lncRNA downstream 49247 6743928 ~ 6744216 (+) True G362095
TU411559 lncRNA downstream 49664 6744345 ~ 6744630 (+) True G362096
TU411562 lncRNA downstream 57680 6752361 ~ 6801297 (+) True G362098
XM_036976670.1 mRNA upstream 137625 6488402 ~ 6555494 (+) False LOC110523126
XM_036976686.1 mRNA downstream 307771 7002452 ~ 7031982 (+) True LOC118964554
XR_005051634.1 mRNA downstream 1036303 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 1047566 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 1051649 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 1555478 8250159 ~ 8289257 (+) True slc27a6
TU411026 other upstream 765193 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 851850 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1393716 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 2045119 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 2145263 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 491245 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 491349 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 995759 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1224241 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 2080651 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile