RNA id: TU411575


Basic Information

Item Value
RNA id TU411575
length 1054
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G362106
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6777761 ~ 6782258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCATTGCACTTAATCAATTTCCCCCCCCAAGTCATACTGTGCAAATGTTTCCGCGTGGACGTCGTTTCCAGACGGGTAAGTGCTACACATGAAACATTAGAATGTTCAGCATTCTATACAATGGCAAGTACAACCACTCCACGTTGCTTGTTGGGCCTTTGCTAgcgtgtgtctgtatgtagccttacCCCCAGTCAGGCTTGTAGGTGTCAGATGCGCGGGGACCCTTCAGGACCAGTATCAGGAACTCGTGCATCTCCAGCAGGATGGAATCAGCGCTGCTTTTATTAAAGAACCCAGTGAGCAGCCTgtgctcctcctctcccaggGCCTTCCTGTACTCTTCTGAGATCCCTTCAAATGGGTCCCTCTTGAGCCACAGCATGTTTTCTGATTTGAGTGATGTCAGGAGCTGCCACAGTGCCAAACAGTGCTTCAGATAGTATCTGCCCAGGGCCGTTAGGATGTGTGGAGCTGTTTGATCTCCCATCTGCAGCACCTCCTCCAGGTAGCTGCCCAGCTCCATGTGGGGTTCTCCCCCGGTCATAGCCAGGAACCCCAGGGCCACCTCTACGGTGGAGAGGGCCTCACACACCTCATTGTACGACTTCAGCTCTCCAACTAGTGTCGACAGGGCCCGCGAGGGCAGAGGCACCTAGAGACACAAAGACAAATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAAGTAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAAGTAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCTATCTCCAAAGTAGAGAGGACAAAGCCCCATCTCCAAAGTAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411559 lncRNA upstream 33131 6744345 ~ 6744630 (+) True G362096
TU411558 lncRNA upstream 33545 6743928 ~ 6744216 (+) True G362095
TU411555 lncRNA upstream 37127 6740405 ~ 6740634 (+) True G362092
TU411541 lncRNA upstream 59041 6718410 ~ 6718720 (+) True G362079
TU411514 lncRNA upstream 83080 6693119 ~ 6694681 (+) True G362053
TU411601 lncRNA downstream 13971 6796229 ~ 6799116 (+) False G362118
TU411602 lncRNA downstream 13971 6796229 ~ 6797164 (+) True G362118
TU411584 lncRNA downstream 45624 6827882 ~ 6830273 (+) False G362111
TU411585 lncRNA downstream 45624 6827882 ~ 6830273 (+) False G362111
TU411586 lncRNA downstream 45624 6827882 ~ 6830273 (+) False G362111
XM_036976670.1 mRNA upstream 222267 6488402 ~ 6555494 (+) False LOC110523126
XM_036976686.1 mRNA downstream 220194 7002452 ~ 7031982 (+) True LOC118964554
XR_005051634.1 mRNA downstream 948726 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 959989 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 964072 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 1467901 8250159 ~ 8289257 (+) True slc27a6
TU411026 other upstream 849835 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 936492 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1478358 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 2129761 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 2229905 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 403668 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 403772 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 908182 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1136664 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 1993074 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile