RNA id: TU411602


Basic Information

Item Value
RNA id TU411602
length 370
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G362118
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6796229 ~ 6799116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTTATTGTTTGGACACGAAGAACCCTTACAAGCACGATCTATATCCTTAATTTTGCCCTCCAGTATTGCTTTGGCAACCACATCTCGGATAGTCTTGTAGTCCTCTCCACAAACAAGATACTGGTCAATCTGGCTGCCATCTTGATTCTTCTGCAGGACCTCGCGAGGGAACAGCCACTGCATATCTGCCACTGTCAGGAAGCGTTGGACATACTCCACTCCGTGCTGGTTGCAGATCTTACGGATCAGGTAGACCCGATACCAGTCATTCCCACTGCGCTTACACAGTTCTCCCACGCTGGTCAGGAATTCTCTCTCTGATGGACCaaatgaggtaaaaaaaaaagaagtgcaACTTACTTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411575 lncRNA upstream 13971 6777761 ~ 6782258 (+) True G362106
TU411559 lncRNA upstream 51599 6744345 ~ 6744630 (+) True G362096
TU411558 lncRNA upstream 52013 6743928 ~ 6744216 (+) True G362095
TU411555 lncRNA upstream 55595 6740405 ~ 6740634 (+) True G362092
TU411541 lncRNA upstream 77509 6718410 ~ 6718720 (+) True G362079
TU411584 lncRNA downstream 30718 6827882 ~ 6830273 (+) False G362111
TU411585 lncRNA downstream 30718 6827882 ~ 6830273 (+) False G362111
TU411586 lncRNA downstream 30718 6827882 ~ 6830273 (+) False G362111
TU411587 lncRNA downstream 30718 6827882 ~ 6830273 (+) False G362111
TU411588 lncRNA downstream 30718 6827882 ~ 6830273 (+) False G362111
XM_036976670.1 mRNA upstream 240735 6488402 ~ 6555494 (+) False LOC110523126
XM_036976686.1 mRNA downstream 205288 7002452 ~ 7031982 (+) True LOC118964554
XR_005051634.1 mRNA downstream 933820 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 945083 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 949166 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 1452995 8250159 ~ 8289257 (+) True slc27a6
TU411026 other upstream 868303 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 954960 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1496826 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 2148229 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 2248373 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 388762 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 388866 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 893276 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1121758 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 1978168 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile