RNA id: TU411587


Basic Information

Item Value
RNA id TU411587
length 1482
lncRNA type intronic
GC content 0.37
exon number 3
gene id G362111
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6827882 ~ 6830273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taccaatgtaaatTAGAGCACTAcgaatgttttgtcatacccgtgggtatagggtctgatataccacgactgtcagccaatcagcattcaggactggaaccccccagtttataatatatttTTGATGATATTATTACATCCGGAGTAATGCAGCCATGTAACATAACATGGGACACTGCCTGACATTAGGttagtcgatctagctggtctgtcagattataatagagacagtggatctagctggtctgtcataatataatagagacaatggatccagttggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcagattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacatagagacagtagatctagctggtctgtcattttataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggcctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggtctgacataatataatagagacagtagatctagctggtctgtcataatataatagagacagtggatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatccagctggtctgtcataatataatagagccaatTCAACAAGTGAATTGTTCAAAATCATTCTAATACCGGACAGTATATTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411562 lncRNA upstream 26585 6752361 ~ 6801297 (+) True G362098
TU411601 lncRNA upstream 28766 6796229 ~ 6799116 (+) False G362118
TU411602 lncRNA upstream 30718 6796229 ~ 6797164 (+) True G362118
TU411575 lncRNA upstream 45624 6777761 ~ 6782258 (+) True G362106
TU411559 lncRNA upstream 83252 6744345 ~ 6744630 (+) True G362096
TU411637 lncRNA downstream 5205 6835478 ~ 6836302 (+) True G362149
TU411645 lncRNA downstream 11073 6841346 ~ 6841722 (+) False G362156
TU411646 lncRNA downstream 11073 6841346 ~ 6841722 (+) True G362156
TU411648 lncRNA downstream 11687 6841960 ~ 6843434 (+) True G362158
TU411607 lncRNA downstream 37235 6867508 ~ 6868310 (+) True G362122
XM_036976670.1 mRNA upstream 272388 6488402 ~ 6555494 (+) False LOC110523126
XM_036976686.1 mRNA downstream 172179 7002452 ~ 7031982 (+) True LOC118964554
XR_005051634.1 mRNA downstream 900711 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 911974 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 916057 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 1419886 8250159 ~ 8289257 (+) True slc27a6
TU411026 other upstream 899956 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 986613 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1528479 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 2179882 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 2280026 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 355653 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 355757 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 860167 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1088649 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 1945059 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile