RNA id: TU411646


Basic Information

Item Value
RNA id TU411646
length 295
lncRNA type intronic
GC content 0.51
exon number 2
gene id G362156
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6841346 ~ 6841722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttcctggagagctaccctcctgtaggttttaactccaaccctgttcctggaaagctaccctcctgtaggttttaactccaaccctgttcctggagagctaccctcctgtaggttaactccaaccctgttcctggagagctaccctcctgtaggttttaactccaaccctgttcctggagagctaccctcctgtaggttttaactccaaccctgttcctggagagctaccctcctgtaggttaactccaaccctgttcctggagagctaccctcctgtaggttttaactacAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411637 lncRNA upstream 5044 6835478 ~ 6836302 (+) True G362149
TU411587 lncRNA upstream 11073 6827882 ~ 6830273 (+) False G362111
TU411648 lncRNA downstream 238 6841960 ~ 6843434 (+) True G362158
TU411607 lncRNA downstream 25786 6867508 ~ 6868310 (+) True G362122
TU411730 lncRNA downstream 180885 7022607 ~ 7022965 (+) True G362234
TU411745 lncRNA downstream 217110 7058832 ~ 7059295 (+) True G362249
TU411751 lncRNA downstream 225321 7067043 ~ 7067771 (+) True G362255
XM_036976670.1 mRNA upstream 285852 6488402 ~ 6555494 (+) False LOC110523126
XM_036976686.1 mRNA downstream 160730 7002452 ~ 7031982 (+) True LOC118964554
XR_005051634.1 mRNA downstream 889262 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 900525 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 904608 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 1408437 8250159 ~ 8289257 (+) True slc27a6
TU411026 other upstream 913420 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 1000077 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1541943 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 2193346 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 2293490 4547035 ~ 4547856 (+) True G360287
TU411797 other downstream 344204 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 344308 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 848718 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 1077200 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 1933610 8775332 ~ 8846116 (+) False cdc42se2

Expression Profile