RNA id: TCONS_00031320


Basic Information

Item Value
RNA id TCONS_00031320
length 646
lncRNA type retained_intron
GC content 0.45
exon number 4
gene id XLOC_015723
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37245382 ~ 37265903 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAGTTAGAAATCATGGCGGAGCGCAGGCGACACAAGAAGCGAATTCAGGAGGTCAGTGAACCTACAAAGGAGGAGAAGGCAGTGGCCAAATACCTGcgctttaactgccccaccaaatCCACCAACATGATGGGACATCGAGTAGATTACTTTGTCGCCTCTAAAGCAGTCGACTGTCTGCTGGATTCAAAGTGGGCCAAAGCAAAAAAGGGCGAAGAAGCTTTGTTCACAACCAGAGAGTCGGTGGTGGACTATTGCAACAGGCtcttaaaaaaacagtttttccaCCGAGCCCTGAAAGTGATGAAGAAGAAGCCAGAGAAAGACGTcaagaaagaaaaggacaaagagaaagaaaaagaaaaagagaaggcTAAAAGTGACAGCAGCAAGGAAGAGGAGAAGAAGAGCAAAAAAGACAAGGACAAAAAGAAGGATTCTGAGGCTGCGGACACAAAGAAGGAGAAAAATGTACAACATCTGGCCGGATGGGGAACAaaatgaataatgtgcaggtcTTGATGCTTGcttttctctctgtgtgtttagGATGACAGTCCTGGATCTCCAAAAAAGAAGAAGGATGTGAAGAAGAAGTTCAAACTGGAGCCTCATGATGACCAGCTGTTCTTGGATGGCAATG

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0031204 posttranslational protein targeting to membrane, translocation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03060 Protein export
ko04141 Protein processing in endoplasmic reticulum
ko02044 Secretion system

ZFIN:

id description
ZDB-GENE-050913-83 Predicted to be involved in posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within protein transport. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human SEC62 (SEC62 homolog, preprotein translocation factor).

Ensembl:

ensembl_id ENSDART00000143311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031310 lncRNA upstream 63168 37176850 ~ 37182269 (+) False XLOC_015720
TCONS_00031311 lncRNA upstream 63168 37176883 ~ 37182269 (+) False XLOC_015720
TCONS_00031301 lncRNA upstream 303958 36939942 ~ 36941479 (+) True XLOC_015717
TCONS_00033282 lncRNA upstream 501525 36742343 ~ 36743912 (+) True XLOC_015712
TCONS_00031290 lncRNA upstream 597886 36646499 ~ 36647551 (+) True XLOC_015708
TCONS_00033613 lncRNA downstream 43167 37301408 ~ 37305390 (+) False XLOC_015725
TCONS_00033614 lncRNA downstream 43183 37301424 ~ 37307571 (+) False XLOC_015725
TCONS_00033615 lncRNA downstream 43281 37301522 ~ 37307571 (+) False XLOC_015725
TCONS_00033616 lncRNA downstream 43301 37301542 ~ 37307571 (+) True XLOC_015725
TCONS_00031328 lncRNA downstream 552789 37811030 ~ 37811963 (+) True XLOC_015731
TCONS_00031317 mRNA upstream 2900 37227011 ~ 37242537 (+) False XLOC_015722
TCONS_00031318 mRNA upstream 3130 37227118 ~ 37242307 (+) True XLOC_015722
TCONS_00031313 mRNA upstream 29448 37207461 ~ 37215989 (+) False XLOC_015721
TCONS_00031315 mRNA upstream 29475 37207475 ~ 37215962 (+) False XLOC_015721
TCONS_00031314 mRNA upstream 29482 37207465 ~ 37215955 (+) False XLOC_015721
TCONS_00031321 mRNA downstream 36847 37295088 ~ 37296159 (+) True XLOC_015724
TCONS_00031322 mRNA downstream 166020 37424261 ~ 37428875 (+) True XLOC_015726
TCONS_00031323 mRNA downstream 172676 37430917 ~ 37436938 (+) True XLOC_015727
TCONS_00031324 mRNA downstream 222428 37480669 ~ 37503009 (+) True XLOC_015728
TCONS_00031325 mRNA downstream 491775 37750016 ~ 37755128 (+) True XLOC_015729
TCONS_00031312 other upstream 43850 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031307 other upstream 101820 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 491679 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031283 other upstream 1120620 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 1121155 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031331 other downstream 578378 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 616530 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031374 other downstream 2798658 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 3777835 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 5165443 42423684 ~ 42423799 (+) True XLOC_015799

Expression Profile

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