RNA id: TU411798


Basic Information

Item Value
RNA id TU411798
length 3790
RNA type TUCP
GC content 0.50
exon number 1
gene id G362297
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7185926 ~ 7189819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCAACTACTGATCGCCCCTTTAAACTAAAGTATGTTCAAAACGGCAAATAGAATGCACAAATCAATATCAAAAGCACTATTCCATAGCTCAGTATCCTCATGTTTTATTGACCTAACTACAGTACATTGGCACACCTCAACAAACACTACTCACCATCATGTAAACCTACCATCATTTCCTACAACTGTACCAGTATGTCCAAGATACATCGTCTCATTTACACGATCCCACTCCCCtccacaaaaaaacatcaatAAATTAGATATTTATACACAATTATTTTTGAAGTGATAGATATGATAAGTCATTGGATGGCAAACGACATGTGAGGTTTCAAAATGAAGACTCATCAGGGGAATCGCTGGCTAATTGATATGATGAACAGCACTGCTCTCCCAACATCCAGACACCTGAGGAAAGGGACACTTTCTAAATGAGGGGGACTGAAGGAAATAAGAATAATCCTCATCCACATAGTTAACAAAAGAAAGGCCCatttttgattatttttttttaaacagtaaaTGTAATGGCTGTGGTTGTGTCTATGTGAGAACATTGAGGTAACGTAGACCCCACATTGGATGTGTGACCAAACACATTCTTGCTCCAAAGTCAATTTACATACACTCCACATCGCTCCTGTTAAGTAGCTGCAGTCCATTCCGGAAATTATTCAGagccattgactttttccaccttttgttatgttacagccttatcctaaaatagattaaataaataaaaaaatccttgtaaatctacacacaatacccccataaagatcatccttgagatgtttctacaacttgatcggagtccacccgtggtaaattctattgattggacattatttggaaaggcacacacctgtctatataaaggtcccacagttgacagtgcatgtcagagcaaaaaccaagccgtagagctccgaggcaggattttgtcgaggcacagatctggggaagggtaccaaaaacattctgcagcattgaaggtcctaaaGAACagagtggtctccatcattcttaaatggaagaagttcggaaccaccaagactcttcctagggggtgaagggccttgctcagagaggttaacaagaacccgatgatcatgctgacagagttacagagttcctctgtggagatgggagaaccttccagaaggacaaccatctctgtagcactccaccaatcagatctttatggtagagtggccagatggaagccactcctcagtaaaaggcacacgacagcccacttggagtttgccaaaaggcacccataGGACTCtcaaccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagcgtcacgtctggagaaaacatggcaccatccctacggtgaagcatggtggtggcagcattatgctgtggatatgtttttcagcggcagggactgggagactactcaggatcgagggaaagatgaacggagcaaagtacagagcgatccttgatgaaaacctgaaaACCTGttgcagagcgctcaggaccccacactggggcgaaggttcactttccaacaggacaaagaccctaagcacacagccaagacagagcaggagtggcttcgggacaagttcttgaatgtccttgagtggcccagccagagcccggacttgaacccgatcgaacatctttggagtgacctgaaaatagctgtgcagagtttgagaggatctgcagagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagactcaaggctgtaatcgttgccaaagatgtttcaacaaagtaccgagtaaaagggtctgaatacttatttaaatgtgatatttacgtgttttatttttaataaattagcaaaaacctgtttttgctttgtcattatggggtcttgtgtgtaaattgataagGGGAATACAAATTTGATTTAAtacactttagaataaggctgaaacgtaacataattagaaaaaagtcaaggggtctgaatactttcagaatgcccTGTATAGCAGTCCACACACCGCAGGACCTAAGGTCCTGATTCCACACAAGCAGATCTGACCAGACTACAAAGCTTTCCAGGATTCTGATCTTGGATCAGTTACATGTGATGCGTCGGTGGCTCAGGCCGCTGCTCGGATATATAATTCTAAATCCAGCTAAACTGATTGGAAGGTGGTCATCCAAGCAGCACGGTCTTAATCTGATCCCGGGACAGGCACATCTGAGCAGCCTATTCAGTGAAACTGATATGGGATAGTGGTGGAGGTGGGAGGGAGACGAGGTGAATGGTGGTTTGGAAATAACATCCGAGATCAGCAGATCTGGGCGGCCTGTTCGTTGACGGCGCACCGGGCCTGATGGACCCTGGTGCAGGAGGACGTGTGACGGTTGAAGCTGTCCCGCCACATGAAGCGTTTGGCGCACAGGCTGCACTCGTAGGGCTTGACGCCCGTGTGAATCTTCATGTGGCCGACCAGGTGGTGTTTCATCTTGAAACTTTTGCCACACACGGCGCAGCCGTACGGCCGCAAGCCCAGGTGCATGCTCATGTGCCGGTCCCGCTGGCTCTTGTGAGTGAAGCTCTTGCCACACTGGCAGGGGTACAGCTTGTAGACCACTGAGGCGAAGCCAGAGTGGGAGGTCTCTTCCTGGAGGCCACCAGGGGTTccttctcctccaccaccactctcCTCAACCCCGGTTGCCTCTTCTAACAGGTCCTCTTTCAGTCCAAGCGGTGTCCCGTCGGCCTTGTCGGTGGAGAAGCCCTCTATGGAGGTACCGTAGAAGTCCAGAGGATCCTCCTCCAGGCTCTCCTCCAGCTGAGCCACCGGTTTCTCATCAATGCCGTGGTCCAGGGAGCTCCTGCTGGCTGAGGCCTGGGAGTGGGTAAGTTTCAGCTGCTCAGGGTCAGTGACAGCAGGGTCCCCGCTAAAGAGGGCCACATCGCCCTTGCAATCTGCGCGCCTTTCTGACTTTACGTGGACCCATTTCCTGTGGCCCATGATGCTGGGTGGGACATAGGCAGGTCTGGAGTACTGGTAGTCCCCCTCGCCACCCTCTTCAACGTCCCCATCCTGGCTGGCGACCTCACTACCTGAGCCATCGTGGTCGACCGGTGGCGAGCAGCTTCCGCTGGGCTGGGTGCTGTTGTTCTCCAGAGTGGGAGGGGAGAAGCTGTTCTCCAGGAGCTGGTCCATCTCCATTTTGGCAAAGCCCTctactgctcctcctcctccaccatcctcCAGGCCCATGGAGCCGTCCCCAGGGCTGTGGTAGTTACTGTCCCCAGGGAAAGGCCTGTCCCTCAGCCCACCAGAAGACTTGTGCACTAATGTGCTAGCGCCGCTTCCTACCACCTCTAAGAGCTCAGTGCATTTGTCCACCACGTGCCACATCTGGAGGAAGCTAGCTGCCGTGAGGAAAGCTACCACCTCGCCGGCAGGTAGGTGCAGGGTGCCCGTGTAGCAAGAGAGGAGGAGACGTTCGAACACGCACGGGTGCATGACGTCAGGTAAAACGCAGCGGGCACTGTTTTTAAGGAGCACTTGGTCGCAAAAGTAGGGCGAACTGGCGGCCAAGATGGCCCGGTGAGCACGGTACTGGTGTCCCTGGATGACTACGATGATGTCACAGAGCTGGCCCCTCTGCCGCTGCTGGTTGAGCTTCTGCAGCATGGTTCCGGAGAAGTTTGGGAAGTCCACGCGGAGCACATTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411803 lncRNA upstream 1364 7182917 ~ 7184666 (+) True G362298
TU411801 lncRNA upstream 4448 7180809 ~ 7181582 (+) False G362298
TU411835 lncRNA upstream 5717 7179060 ~ 7180313 (+) True G362327
TU411831 lncRNA upstream 10962 7174858 ~ 7175068 (+) True G362324
TU411827 lncRNA upstream 14186 7171615 ~ 7171844 (+) True G362320
TU411836 lncRNA downstream 756 7190575 ~ 7190840 (+) True G362328
TU411838 lncRNA downstream 1988 7191807 ~ 7192058 (+) True G362330
TU411881 lncRNA downstream 85834 7275653 ~ 7277272 (+) True G362368
TU411941 lncRNA downstream 198948 7388767 ~ 7392251 (+) False G362426
TU411942 lncRNA downstream 198948 7388767 ~ 7392251 (+) True G362426
XM_036976686.1 mRNA upstream 154048 7002452 ~ 7031982 (+) True LOC118964554
XM_036976666.1 mRNA upstream 630536 6513829 ~ 6555494 (+) False LOC110523126
XR_005051634.1 mRNA downstream 541165 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 552428 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 556511 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 1060340 8250159 ~ 8289257 (+) True slc27a6
XM_021601561.2 mRNA downstream 1101036 8290855 ~ 8307015 (+) False isoc1
TU411026 other upstream 1258104 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 1344761 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 1886627 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 2538030 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 2638174 4547035 ~ 4547856 (+) True G360287
TU412128 other downstream 500621 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 729103 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 1585513 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 2039019 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 2658884 9848703 ~ 9849154 (+) True G365197

Expression Profile