RNA id: TU412050


Basic Information

Item Value
RNA id TU412050
length 442
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G362523
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7587535 ~ 7588012 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGGGGTTTGGAAATGATGTAGACAATTACATTGACAGAAGCCCTAATCTATCTGCAGTATTAAAGCTGATGTACcaccttaaaaaatatatataaaatatccctaacccatacactaaccttaacccatacacTAACCCatacactaaccttaacccatacactaaccttaacccatacactatccctaacccatacactaaccttaacccatacacTAACCCTAACCCatacactaaccttaaccctaacacatacactaaccttaacccatacactaaccttaacccatacactaaccttaacccatacactaaccttaacccatacactaaccttaacccatacactaaccttaacccatacactaaccttaacccatacactaaccttaacccatacactaacgttaaccctaaccctaacccatacactaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411984 lncRNA upstream 139603 7445849 ~ 7447932 (+) True G362460
TU411956 lncRNA upstream 173515 7406370 ~ 7414020 (+) True G362434
TU411950 lncRNA upstream 182193 7404554 ~ 7405342 (+) True G362432
TU411941 lncRNA upstream 195284 7388767 ~ 7392251 (+) False G362426
TU411942 lncRNA upstream 195284 7388767 ~ 7392251 (+) True G362426
TU412070 lncRNA downstream 10200 7598212 ~ 7607946 (+) False G362530
TU412078 lncRNA downstream 10200 7598212 ~ 7620771 (+) True G362530
TU412112 lncRNA downstream 56103 7644115 ~ 7644680 (+) True G362542
TU412123 lncRNA downstream 82878 7670890 ~ 7671313 (+) True G362551
TU412133 lncRNA downstream 108965 7696977 ~ 7699255 (+) True G362555
XM_036976686.1 mRNA upstream 555553 7002452 ~ 7031982 (+) True LOC118964554
XM_036976666.1 mRNA upstream 1032041 6513829 ~ 6555494 (+) False LOC110523126
XR_005051634.1 mRNA downstream 142972 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 154235 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 158318 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 662147 8250159 ~ 8289257 (+) True slc27a6
XM_021601561.2 mRNA downstream 702843 8290855 ~ 8307015 (+) False isoc1
TU411797 other upstream 397716 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 397716 7186030 ~ 7189819 (+) True G362297
TU411026 other upstream 1659609 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 1746266 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 2288132 5296870 ~ 5299403 (+) True G360985
TU412128 other downstream 102428 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 330910 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 1187320 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 1640826 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 2260691 9848703 ~ 9849154 (+) True G365197

Expression Profile