RNA id: TU412070


Basic Information

Item Value
RNA id TU412070
length 3204
lncRNA type intronic
GC content 0.40
exon number 7
gene id G362530
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7598212 ~ 7620771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatagaacagacatgagacagtaaagtaaagaacagacatgagacagtatagaacagaacagacatgggacagcaaagaacagacatgggagagtaaagaacagacatgggacagtaaagaacagacatgggacagtatagaacagaacagacatgagacagtaaagaacagacatgggacagtaaagtaaagaacagacatgggacagtaaagaacagacatgagacagtaaagaacagacatgggagagTAAAGAATAGACATGGgagagtaaagaacagacatgggacagtaaagaacagacatgagacagtaaagaacagacatgggacagtatagaacagacatcagacagtaaagtaaagaacagacatgggaaagtatagaacagacatgggacagtaaagaacagacatgggacagtaaagaacagacatgggagagtaaagaacagacatgggacagtaaagaacagacatgagacagtatagaacagaacagacatgagacagtaaagaacagacatgggacagtaaagtaaagaacagacatgggacagtaaagaacagacatgagacagtaaagaacagatatgggacagtaaagaacagacatgggacagtaaagaacagacatggaacagtaaagaacagacatgagacagtaaaaaacagacatgggacattaaagtaaagaacagacatgggtcAGTAAAGAACAGATAtgagacagtatagaacagacatgggacagtaaagaacagacatgggacagtaaagtaaagaacagacatgggacagtaaagaacagacatgagacagtaaagaacagacatgggagagTAAAGAATAGACATGGGAGAGTAAAGAATAGACATGGgagagtaaagaacagacatgagacagtatagaacagagatGGGAAagtatagaacagacatgggacagtaaaaaacagacatgggacagtaaagaacagacatgggacagtatagaacagagatgggacagtaaagtaaagaacagacatgggacagtatagatCAGAACAGACACGGGACAGTATAGATCAGAACAGACacgggacagtatagaacagaacaaacatgggacagtaaagaacagacatgggacagtatagaacagaacagacacgggacagtaaagaacagacatgggacagtatagaacagaacagacatgtGACAttatagaacagacatgggacagtatagaacagacatgggacagtaaagaacagacatgggacagtatataacagacatgggacagtatagaacagacatgagacagtaaagaacagatatgagacagtatagaacagatatgggacagtaaagtaaagaacagacatgtgacagtaaagaacagacatgggacagtaaagaacagacatgggacagtagagaacagaacagacatgggacagtaaagaacagacatgggacagtatagaacagagatgggacagtaaagtaaagaacagacatgggacagtatagatCAGAACAGACACGGGACAGTATAGATCAGAACAGAcacgggacagtaaagaacagacatgagacagtaaagaacagatatgagacagtatagaacagacatgggacagtaaagaacagacatgggacagtaaagtaaagaaaagacatgggacagtaaagaacagacatgggacagtaaagaacagacatgggacagtaaagaacagacatgggacagtatagaacagacatgggacagtaaagaccagacatgggacagtaaagaacagacatgagacagtaaagaacagacatgggacagtaaagaacagacatgggacagtaaagaacagacatgggacagtattgAACAGACATgcgacagtatagaacagacatgggacagtaaagaacagacatgagacagtaaagaacagacatgggacagaaaagaacagacatgggacagtaaagaacagacatgggacagtaaagaacagacaagGGACAgtctagaacagaacagacatgggacattataaaacagaacagacatgggacagtaaagaacagacatgggagagtaaagaacagacatgggacagtaaagaacagacatgggacagtatagaacagaacagacatgagacagtaaagaacagacatgggacagtaaagtaaagaacagacatgggacagtaatgaacagacatgagacagtaaagaacagacatgggacagtatagaacagaacagacatgggacagtaaagaacagacatgagacagtaaagaacagatatgggacagtaaagaacagacatgggacagtaaagaacaaacatggaacagtaaagaacagacatgagacagtaaagaacagacatgggaccgTAAAGAACAGATatgagacagtaaagaacagatatgagacagtaaagaacagacatgggatattaaagtaaagaacagacatgggtcAGTAAAGAACAGATAtgagacagtatagaacagacatgggacagtaaagaacagacatgggacagtaaagtaaagaacagacatgggacagtaaagaacagacatgagacagtaaagaacagacatgggagagtaaagaacagacatgggagagtaaagaacagacatgggacagtaaagaacagacatgagacagtaaaggacatgggacagtatagaacagacatgagacagtaaagtaaagaacagacatgggacagtaaagaacagacaagGGACAgtctagaacagaacagacatgggacagtataaaACAGAACatacatgggacagtaaagaacagacatgggagagtaaagaacagacatgggacagtaaagaacagacatgggacagtatagaacagaacagacatgagacagtaaagaacagacatgggacagtaaagtaaagaacagacatgggacagtaatgaacagacatgagacagtaaagaacagacatgggacagtatagaacagaacagacatgggacagtaaagaacagacatgagacagtaaagaacatacatgggacagtaaagaacagacatgggacagtaaagaacaaacatggaacagtaaagaacagacatgagacagtaaagaacagatatGAGaaggtaaagaacagacatgggatattaaagtaaagaacagacatgggtcAGTAAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412050 lncRNA upstream 10200 7587535 ~ 7588012 (+) False G362523
TU412052 lncRNA upstream 10200 7587535 ~ 7588012 (+) True G362523
TU411984 lncRNA upstream 150280 7445849 ~ 7447932 (+) True G362460
TU411956 lncRNA upstream 184192 7406370 ~ 7414020 (+) True G362434
TU411950 lncRNA upstream 192870 7404554 ~ 7405342 (+) True G362432
TU412112 lncRNA downstream 36169 7644115 ~ 7644680 (+) True G362542
TU412123 lncRNA downstream 62944 7670890 ~ 7671313 (+) True G362551
TU412133 lncRNA downstream 89031 7696977 ~ 7699255 (+) True G362555
TU412178 lncRNA downstream 148035 7755981 ~ 7756303 (+) True G362589
TU412192 lncRNA downstream 172445 7780391 ~ 7780936 (+) True G362601
XM_036976686.1 mRNA upstream 566230 7002452 ~ 7031982 (+) True LOC118964554
XM_036976666.1 mRNA upstream 1042718 6513829 ~ 6555494 (+) False LOC110523126
XR_005051634.1 mRNA downstream 123038 7730984 ~ 7741925 (+) True LOC118964556
XM_036976695.1 mRNA downstream 134301 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA downstream 138384 7746330 ~ 7868565 (+) True mapkap1
XM_021601559.2 mRNA downstream 642213 8250159 ~ 8289257 (+) True slc27a6
XM_021601561.2 mRNA downstream 682909 8290855 ~ 8307015 (+) False isoc1
TU411797 other upstream 408393 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 408393 7186030 ~ 7189819 (+) True G362297
TU411026 other upstream 1670286 5803828 ~ 5927926 (+) False G361671
TU411029 other upstream 1756943 5803828 ~ 5841269 (+) False G361671
TU410157 other upstream 2298809 5296870 ~ 5299403 (+) True G360985
TU412128 other downstream 82494 7690440 ~ 7692514 (+) True G362554
TU412257 other downstream 310976 7918922 ~ 7919565 (+) True G362662
TU412732 other downstream 1167386 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 1620892 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 2240757 9848703 ~ 9849154 (+) True G365197

Expression Profile