RNA id: TCONS_00031322


Basic Information

Item Value
RNA id TCONS_00031322
length 699
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_015726
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37424261 ~ 37428875 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACAGCATGAATGAATCACACGCAGACAGCAGCAGCAGCGCGCAGCTCTCATATGACAAGGCAggtacatacacgcacacacgcacacacgcacacacacacacacacgctgatgCGCCTTTAACACTCCATGCGGGACACACGCGTCATGCTCACATCATTGGCCAAAGCTGGAGACGAGCACACTTAATgataaaaaacatttgttgaaaaAGATTCCCGTCAAATCGGGTTTTAGAATAAATCAGTGTCCCACGAAAAGCTGTCAGAGGTGGGCGTTTCTCTGTCACTGGGTTATTAGAAGCACTTAGAGATGAAGCAGCTCAGATGATGACTGACTGAGGCAGCATGAACCATCGGCCTGACCAAATATTTCACAGCGCATTTCTTGGCTAACACGCCACTCTAATGGGTGATGCAGATAAACCGAGTCAGGAGGAGCTGAAGGGAGACGGTGGTGTGACAACAGCCTCCACCACTGTCACTTCCACCACCCCCACAGGCACCTCCATTCCTCTGGGAAACATCTCGTCAGACAGACAGGCAGTCCAGGTAATTCAGCAGACGCTGCACAGACCACAAAGCATGACAGCTCAGTACCTGCAACAGATGTATGCAGCTCAACAACAACACATCCTGCTGCAGACAGCAGCGCtacaacagcaacagcaacaTCAACAAAACCTCACCGCTGCACA

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070912-369 Orthologous to human PHC3 (polyhomeotic homolog 3).

Ensembl:

ensembl_id ENSDART00000132427

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033614 lncRNA upstream 116690 37301424 ~ 37307571 (+) False XLOC_015725
TCONS_00033615 lncRNA upstream 116690 37301522 ~ 37307571 (+) False XLOC_015725
TCONS_00033616 lncRNA upstream 116690 37301542 ~ 37307571 (+) True XLOC_015725
TCONS_00033613 lncRNA upstream 118871 37301408 ~ 37305390 (+) False XLOC_015725
TCONS_00031320 lncRNA upstream 166020 37245437 ~ 37258241 (+) True XLOC_015723
TCONS_00031328 lncRNA downstream 382155 37811030 ~ 37811963 (+) True XLOC_015731
TCONS_00031330 lncRNA downstream 397859 37826734 ~ 37827039 (+) True XLOC_015733
TCONS_00031339 lncRNA downstream 497505 37926380 ~ 37927412 (+) True XLOC_015737
TCONS_00033283 lncRNA downstream 539110 37967985 ~ 37971044 (+) True XLOC_015738
TCONS_00033284 lncRNA downstream 544063 37972938 ~ 37973738 (+) True XLOC_015739
TCONS_00031321 mRNA upstream 128102 37295088 ~ 37296159 (+) True XLOC_015724
TCONS_00031319 mRNA upstream 158358 37245382 ~ 37265903 (+) False XLOC_015723
TCONS_00031317 mRNA upstream 181724 37227011 ~ 37242537 (+) False XLOC_015722
TCONS_00031318 mRNA upstream 181954 37227118 ~ 37242307 (+) True XLOC_015722
TCONS_00031315 mRNA upstream 208299 37207475 ~ 37215962 (+) False XLOC_015721
TCONS_00031323 mRNA downstream 2042 37430917 ~ 37436938 (+) True XLOC_015727
TCONS_00031324 mRNA downstream 51794 37480669 ~ 37503009 (+) True XLOC_015728
TCONS_00031325 mRNA downstream 321141 37750016 ~ 37755128 (+) True XLOC_015729
TCONS_00031326 mRNA downstream 334049 37762924 ~ 37770331 (+) True XLOC_015730
TCONS_00031327 mRNA downstream 375360 37804235 ~ 37812185 (+) False XLOC_015731
TCONS_00031312 other upstream 222674 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031307 other upstream 280644 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 670503 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031283 other upstream 1299444 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 1299979 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031331 other downstream 407744 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 445896 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031374 other downstream 2628024 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 3607201 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 4994809 42423684 ~ 42423799 (+) True XLOC_015799

Expression Profile

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