RNA id: TU412350


Basic Information

Item Value
RNA id TU412350
length 314
lncRNA type intronic
GC content 0.31
exon number 1
gene id G362733
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8140625 ~ 8140938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTAATAAACAACACACCTAACGCTTTTTTTGGTTTGTGGCTTCATTCTTTACTAACATCTGCAAAGCAGAGTTATATTTGCTGTATTTGTGTACATGATAGGTAAATGTAGATCAAGTAAATGTACTATTTGATATACtgcagattttgcaggttttcctacttgcaaagcatgtagaggtctgtaatttttatcacaggtacacttcaactgtgagagacggaatctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattaatttgcattttattacatgacaaaagtatttgatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412342 lncRNA upstream 10788 8129634 ~ 8129837 (+) True G362726
TU412338 lncRNA upstream 14609 8125740 ~ 8126016 (+) True G362722
TU412324 lncRNA upstream 45668 8094734 ~ 8094957 (+) True G362708
TU412323 lncRNA upstream 50132 8090256 ~ 8090493 (+) True G362707
TU412322 lncRNA upstream 53481 8086931 ~ 8087144 (+) True G362706
TU412352 lncRNA downstream 1212 8142150 ~ 8142389 (+) True G362735
TU412353 lncRNA downstream 1503 8142441 ~ 8142818 (+) True G362736
TU412354 lncRNA downstream 2141 8143079 ~ 8143371 (+) True G362737
TU412362 lncRNA downstream 29134 8170072 ~ 8170297 (+) True G362745
TU412364 lncRNA downstream 31354 8172292 ~ 8172550 (+) True G362747
XM_036976695.1 mRNA upstream 272060 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA upstream 272060 7746330 ~ 7868565 (+) True mapkap1
XR_005051634.1 mRNA upstream 398700 7730984 ~ 7741925 (+) True LOC118964556
XM_036976686.1 mRNA upstream 1108643 7002452 ~ 7031982 (+) True LOC118964554
XM_036976673.1 mRNA upstream 1585131 6530919 ~ 6555494 (+) False LOC110523126
XM_021601559.2 mRNA downstream 109221 8250159 ~ 8289257 (+) True slc27a6
XM_021601561.2 mRNA downstream 149917 8290855 ~ 8307015 (+) False isoc1
XM_036976698.1 mRNA downstream 242707 8383645 ~ 8507630 (+) True LOC110524944
XM_036976534.1 mRNA downstream 369695 8510633 ~ 8515635 (+) True minar2
XM_036976699.1 mRNA downstream 376318 8517256 ~ 8701336 (+) False chsy3
TU412257 other upstream 221060 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 448111 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 950806 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 950806 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2299356 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 634394 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 1087900 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1707765 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2835744 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 3284704 11425642 ~ 11428710 (+) True G366973

Expression Profile