RNA id: TU412362


Basic Information

Item Value
RNA id TU412362
length 226
lncRNA type intronic
GC content 0.52
exon number 1
gene id G362745
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8170072 ~ 8170297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccgacagaaacaaTCAATCAGTTCTCCCCATGatgcagcgagtcggagtcagaggccgagccttctctggtctctactcctcccgttacggggtctgagacgccgaagcctcccaccattagctctgacaaattgaaaaccctagtcattggcgactccattacccgcagtattagacttaaaacgaatcatccagcgatcatacactgtttaccagggggcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412354 lncRNA upstream 26701 8143079 ~ 8143371 (+) True G362737
TU412353 lncRNA upstream 27254 8142441 ~ 8142818 (+) True G362736
TU412352 lncRNA upstream 27683 8142150 ~ 8142389 (+) True G362735
TU412350 lncRNA upstream 29134 8140625 ~ 8140938 (+) True G362733
TU412342 lncRNA upstream 40235 8129634 ~ 8129837 (+) True G362726
TU412364 lncRNA downstream 1995 8172292 ~ 8172550 (+) True G362747
TU412365 lncRNA downstream 2640 8172937 ~ 8173634 (+) True G362748
TU412367 lncRNA downstream 12389 8182686 ~ 8182947 (+) True G362750
TU412378 lncRNA downstream 34014 8204311 ~ 8204782 (+) True G362760
TU412379 lncRNA downstream 35003 8205300 ~ 8205655 (+) True G362761
XM_036976695.1 mRNA upstream 301507 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA upstream 301507 7746330 ~ 7868565 (+) True mapkap1
XR_005051634.1 mRNA upstream 428147 7730984 ~ 7741925 (+) True LOC118964556
XM_036976686.1 mRNA upstream 1138090 7002452 ~ 7031982 (+) True LOC118964554
XM_036976673.1 mRNA upstream 1614578 6530919 ~ 6555494 (+) False LOC110523126
XM_021601559.2 mRNA downstream 79862 8250159 ~ 8289257 (+) True slc27a6
XM_021601561.2 mRNA downstream 120558 8290855 ~ 8307015 (+) False isoc1
XM_036976698.1 mRNA downstream 213348 8383645 ~ 8507630 (+) True LOC110524944
XM_036976534.1 mRNA downstream 340336 8510633 ~ 8515635 (+) True minar2
XM_036976699.1 mRNA downstream 346959 8517256 ~ 8701336 (+) False chsy3
TU412257 other upstream 250507 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 477558 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 980253 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 980253 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2328803 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 605035 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 1058541 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1678406 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2806385 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 3255345 11425642 ~ 11428710 (+) True G366973

Expression Profile