RNA id: TU412378


Basic Information

Item Value
RNA id TU412378
length 472
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G362760
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8204311 ~ 8204782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGTAGGGACTCCtgttttcctcttctcctcactcGATTTGAGGCAGCCGTCTGATCTCCATCCACCTTGAGAAGCGTTTTCCCCCCGAGCGTCGGAGGGTCTTGTCCTGTTACTTTTACCACGAGAAAACCCGTCAACGCCACCAGTCCAACCAAGCACGAAAACATCCTCTTGGTCCACATCCTAAACAAACTTTTTGTCTAATTTTCCAATGTGTTGTTATTTCATCCGATGGAATGAATCTCAAGAATGGCTACACAGAGCGCATTTTCCACTATCATCTATACATACAAATACATGAAGTTCAAATAAAACCtaacagaaaaaaaaaaagtttagaaCGAAAAATGTCGTGTTGCCTCTTGAGTTTCAAAGACGGTCCTGTAATGTCACCGCGGGAACGACACAGAGGAGGTCTGACTGAGAAGCAGACACAGATTTCAACTGAGGTGTATTGAGATACACCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412367 lncRNA upstream 21364 8182686 ~ 8182947 (+) True G362750
TU412365 lncRNA upstream 30677 8172937 ~ 8173634 (+) True G362748
TU412364 lncRNA upstream 31761 8172292 ~ 8172550 (+) True G362747
TU412362 lncRNA upstream 34014 8170072 ~ 8170297 (+) True G362745
TU412354 lncRNA upstream 60940 8143079 ~ 8143371 (+) True G362737
TU412379 lncRNA downstream 518 8205300 ~ 8205655 (+) True G362761
TU412403 lncRNA downstream 26144 8230926 ~ 8231463 (+) True G362783
TU412405 lncRNA downstream 27154 8231936 ~ 8301026 (+) True G362784
TU412411 lncRNA downstream 39919 8244701 ~ 8247318 (+) False G362789
TU412412 lncRNA downstream 41351 8246133 ~ 8247734 (+) True G362790
XM_036976695.1 mRNA upstream 335746 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA upstream 335746 7746330 ~ 7868565 (+) True mapkap1
XR_005051634.1 mRNA upstream 462386 7730984 ~ 7741925 (+) True LOC118964556
XM_036976686.1 mRNA upstream 1172329 7002452 ~ 7031982 (+) True LOC118964554
XM_036976673.1 mRNA upstream 1648817 6530919 ~ 6555494 (+) False LOC110523126
XM_021601559.2 mRNA downstream 45377 8250159 ~ 8289257 (+) True slc27a6
XM_021601561.2 mRNA downstream 86073 8290855 ~ 8307015 (+) False isoc1
XM_036976698.1 mRNA downstream 178863 8383645 ~ 8507630 (+) True LOC110524944
XM_036976534.1 mRNA downstream 305851 8510633 ~ 8515635 (+) True minar2
XM_036976699.1 mRNA downstream 312474 8517256 ~ 8701336 (+) False chsy3
TU412257 other upstream 284746 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 511797 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1014492 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1014492 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2363042 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 570550 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 1024056 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1643921 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2771900 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 3220860 11425642 ~ 11428710 (+) True G366973

Expression Profile