RNA id: TU412403


Basic Information

Item Value
RNA id TU412403
length 538
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G362783
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8230926 ~ 8231463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctccacactgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactcggtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagtctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtatcggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacatagactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatataccctccacactgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccggtaccccctgtacagtgccttgtgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412379 lncRNA upstream 25271 8205300 ~ 8205655 (+) True G362761
TU412378 lncRNA upstream 26144 8204311 ~ 8204782 (+) True G362760
TU412367 lncRNA upstream 47979 8182686 ~ 8182947 (+) True G362750
TU412365 lncRNA upstream 57292 8172937 ~ 8173634 (+) True G362748
TU412364 lncRNA upstream 58376 8172292 ~ 8172550 (+) True G362747
TU412405 lncRNA downstream 473 8231936 ~ 8301026 (+) True G362784
TU412411 lncRNA downstream 13238 8244701 ~ 8247318 (+) False G362789
TU412412 lncRNA downstream 14670 8246133 ~ 8247734 (+) True G362790
TU412410 lncRNA downstream 15136 8246599 ~ 8247318 (+) True G362789
TU412432 lncRNA downstream 75063 8306526 ~ 8306983 (+) False isoc1
XM_036976695.1 mRNA upstream 362361 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA upstream 362361 7746330 ~ 7868565 (+) True mapkap1
XR_005051634.1 mRNA upstream 489001 7730984 ~ 7741925 (+) True LOC118964556
XM_036976686.1 mRNA upstream 1198944 7002452 ~ 7031982 (+) True LOC118964554
XM_036976673.1 mRNA upstream 1675432 6530919 ~ 6555494 (+) False LOC110523126
XM_021601559.2 mRNA downstream 18696 8250159 ~ 8289257 (+) True slc27a6
XM_021601561.2 mRNA downstream 59392 8290855 ~ 8307015 (+) False isoc1
XM_036976698.1 mRNA downstream 152182 8383645 ~ 8507630 (+) True LOC110524944
XM_036976534.1 mRNA downstream 279170 8510633 ~ 8515635 (+) True minar2
XM_036976699.1 mRNA downstream 285793 8517256 ~ 8701336 (+) False chsy3
TU412257 other upstream 311361 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 538412 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1041107 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1041107 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2389657 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 543869 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 997375 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1617240 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2745219 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 3194179 11425642 ~ 11428710 (+) True G366973

Expression Profile