RNA id: TU412405


Basic Information

Item Value
RNA id TU412405
length 287
lncRNA type read_through
GC content 0.40
exon number 2
gene id G362784
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8231936 ~ 8301026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttaagttaatactttgtagtacttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcaagctcagtgaggttggatggagagcatttgtgaacagcaattttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412403 lncRNA upstream 473 8230926 ~ 8231463 (+) True G362783
TU412379 lncRNA upstream 26281 8205300 ~ 8205655 (+) True G362761
TU412378 lncRNA upstream 27154 8204311 ~ 8204782 (+) True G362760
TU412367 lncRNA upstream 48989 8182686 ~ 8182947 (+) True G362750
TU412365 lncRNA upstream 58302 8172937 ~ 8173634 (+) True G362748
TU412432 lncRNA downstream 5500 8306526 ~ 8306983 (+) False isoc1
TU412433 lncRNA downstream 5541 8306567 ~ 8307147 (+) True isoc1
TU412441 lncRNA downstream 8528 8309554 ~ 8310216 (+) True G362812
TU412443 lncRNA downstream 10224 8311250 ~ 8311567 (+) True G362814
TU412444 lncRNA downstream 11099 8312125 ~ 8312430 (+) True G362815
XM_036976695.1 mRNA upstream 363371 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA upstream 363371 7746330 ~ 7868565 (+) True mapkap1
XR_005051634.1 mRNA upstream 490011 7730984 ~ 7741925 (+) True LOC118964556
XM_036976686.1 mRNA upstream 1199954 7002452 ~ 7031982 (+) True LOC118964554
XM_036976673.1 mRNA upstream 1676442 6530919 ~ 6555494 (+) False LOC110523126
XM_036976698.1 mRNA downstream 82619 8383645 ~ 8507630 (+) True LOC110524944
XM_036976534.1 mRNA downstream 209607 8510633 ~ 8515635 (+) True minar2
XM_036976699.1 mRNA downstream 216230 8517256 ~ 8701336 (+) False chsy3
XR_005051936.1 mRNA downstream 406713 8707739 ~ 8712041 (+) True LOC118964742
XM_021601567.2 mRNA downstream 468758 8769784 ~ 8772389 (+) True lyrm7
TU412257 other upstream 312371 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 539422 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1042117 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1042117 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2390667 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 474306 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 927812 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1547677 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2675656 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 3124616 11425642 ~ 11428710 (+) True G366973

Expression Profile