RNA id: TU414147


Basic Information

Item Value
RNA id TU414147
length 2974
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id G364312
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8286015 ~ 8289236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTCCATATCATATTCACAATGGCGCAGACTATTCCCATAATCAGCTAGGCTAAATATGTGTTCTAAAAAAAAACTGTTCATGAAGGCTTCAATGGATGACAATGGAaaacacaaatacagtacatatactGTTGGACCTCAATGGGTTAAAAACCCTACAGCTTGCAAGGTCTTCCCAGCGCACACAGTAAAAGTACCCTGAGAGAATCAACACAACGGGTGGTATAACTAGTTCCACTTGATGCAGCCACAGCGCTTTATTACCTGTTGTAAGAAAGCATCAGTCTTGTTTTAAAAGCCTGTACTACGTCTCTCTATGTATCTGTTGTAAGAAAGCATCAGTCTTGTTTTAAAAGCCTGTACTACGTCTCTCTATGTATCTGTTGTAAGAAAGCATCAGTCTCGTTTTAAAAGCCTGTAATACGTCTCTCTATGTATCATGTTTTCAACTGACTGAAATTTGAGATGATCATTATGAGGTAAGACTTTAtcaaagggggagaggggggagggggggggggggtgtcatacatgattataacatgttttaCAATGCATTATAAACCACATCGTAATGCATTCAACATAACTGTCAGTGTTAAGTAGTGTTATagcttttacacacacactgacattaaCAGGACTGTCAGATCACTCTGACTATTTACTGTTGTAGCCCTAAGACCCTAGCTGTTACTGCAAAATGTACAGGCATATTTTCCATTTTGGAAAGATGTGTTTCGGGTAAAAGCAAAGATGACAAATGACACCAGAAATTGAATCTGAATCGAACATTTTTGAATTTGTATAAGGAAATGGAATCCTATTGAATTCGTATAAGGAAATGGAATCCTATTGAATTCGAAATGGAATCTGGTGGCACTAGTATCACTATAAGTGTCTGAAGGAAAAGTTGAAAATGGTGGTCCATATAACTATAAGGGTTGATGTATCTGGCACACAAGCACTGGACACACATTCACCCAAATTAAATACTATCAAATTAAAATGATAAACAACAAATGCTGTTAAAAACACCATTTgaccaaatattcaacattttaaataaTCAAAGTGAAATAAATGTGTTTGGCTGTCCCAAACAGGAAAGTAAAACAAGAGGTTTCAGTCAACCTAAAAATCGCTGATTTTCACACTGCGCAAATCAACTTCATTGCAATCATTCATTGTGCTTAAATGATATGAAAATTATATTATAGTCCTAGCTAGATTAATCATAGGGACTTGATCATCTCAATGAATTCGACATTGTAAACTATAGTCTTCTTCACCAAAACATAGTTCAAATAGCTGTACAAATTAACAATACCTATACATAGAAAACTCTTAAACAAAGGGCTGAATTCAGTCAAACCTGCCTTAGCCTCAAACATGCCTTAGTAAGTAGAGATACTGCATAAATGAGGCCAACTACCCAGATGCCTAATTACAAAGCTAGGAGCATCTACTTATAAGAGGTGGCTTGCTTGTTCTTttactagcctggtctcagacccgttgtctccttctatagcctggtcccagatctgttgtctccttctatagcctggtcccagatctgttgtctcctcctgtagcctggtcccagatctgttgtctccttctatagcatggtcccagatctgtttgtgctcttgccaactccattgcaAGTCAAATATGACAAGTATTGGCATGACATTGGCCTCAGGCTAGTATTTTACAGTACCAAAAccacattgttattttattgagGGGATAAGGCATTAACACTGGTTTGACTGAATTGGACCCTTAAAAGAATCACTGACAAACTTCTCAGCTGTCATTTGACAGTAAATATAATCACGTTGCATCACATTCAGACCCCCGGGTTCAAATAGTACTTGTTTTCTTGAGGTGGTCGTACAATGGAACCACTGGAACAGATTGAAAAGTACAAGTAAGGAAATAAAGACTACTTGGACCTGGGTCTGGTTACATCTCAAGAGTAACACAAGATGGTAATGACTAACTGGCAAAACTGTTGAAAACAAGACATAGTGCATGATGCCCTTAATAAACTAGTGCTGTGCCAGTGGACTGTACTATCTCAACACAGTTACTGGACGACACCTAACAAATGTACTTTTGCGAAGCACACCTACTTTGGTTTAAATTATGAGCCTTGActatatgtataaaataaatacaatttttaaaaagaAAAATAATTACTACCATTTGTAGCAAAGCGTATGGACCGTTTCTGATATTAAAAGTTCATTCCTACGTTGGTTAGTGTAGTAGGTCAGAACGAAGAATTTTGGGTGGCCAGAATGTGGTCATCGGTGCCTCAAAACACACGACGCCTCTATTTAGTCTGCCATTCGTCTTTATTTCAACGAGGAACTAGTGACACTTTATGACATCCCATCCGCAAATTAAAAATGGCACAGACGGACAGTGGAAGTGCTGATTGTCGAGGTTCACTGGTCTCAAGTCAATTTAGCCTTCTCAGCTGAACTGTCTTGACAATAGATCTGGAAACCAGAGAGGAAAACGGCTATTTtttttagtaaaaaaaataataaaatcagATGAGGCACAAATTACACCCCCATCAGTATAAGACTGACCCCCCCCTATTCATCATTAACCCACTCTGTTGATCCCGACCACTCATACGAGACAATTTCAGACATTATACACAATTAGGAATAGACCCAATTGACGGTCTCTCGGCCCCTCTTCGAAACGGCACAACTATGCTGCCACCGTCTCAGTGAACCAAATGGGTTGGTGGTTTTAGCTACGGTTAACCACTATAGCTTCCGCTCGCCAGCCAAAATGCTGCCGTACAGCGTGTTCGTGAGGGGAACGTAGCTTTTCTCGGAGAAATCCAGGAAATAGAGTGGGCTGCAGATTGTTGAAGGGTTGAATCCGCTCTCCACTAGATTGAATTTCTGCTGCTTGAAGGTTCCCGTCATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414092 lncRNA downstream 89709 8195821 ~ 8196306 (-) True G364259
TU414084 lncRNA downstream 90881 8188808 ~ 8195134 (-) False G364257
TU414086 lncRNA downstream 90881 8191910 ~ 8195134 (-) True G364257
TU414080 lncRNA downstream 106525 8179261 ~ 8179490 (-) True G364255
TU414076 lncRNA downstream 115656 8170041 ~ 8170359 (-) True G364251
TU414154 lncRNA upstream 16015 8305251 ~ 8307147 (-) True G364318
TU414152 lncRNA upstream 17270 8306506 ~ 8306983 (-) True G364316
TU414160 lncRNA upstream 20402 8309638 ~ 8310134 (-) True G364323
TU414161 lncRNA upstream 21086 8310322 ~ 8310541 (-) True G364324
TU414162 lncRNA upstream 22042 8311278 ~ 8311522 (-) True G364325
XM_021601558.2 mRNA downstream 56724 8208382 ~ 8229291 (-) True LOC110523142
XM_021601557.2 mRNA downstream 56736 8206491 ~ 8229279 (-) False LOC110523142
XM_036976697.1 mRNA downstream 81497 7882389 ~ 8204518 (-) True LOC110524943
XM_036976689.1 mRNA downstream 563888 7593362 ~ 7722127 (-) False LOC110523137
XM_036976691.1 mRNA downstream 563888 7593362 ~ 7722127 (-) False LOC110523137
XM_021601566.2 mRNA upstream 471595 8760831 ~ 8765948 (-) True hint1
XM_036976535.1 mRNA upstream 568381 8857617 ~ 8864575 (-) True LOC110524946
XM_036976711.1 mRNA upstream 855901 9145137 ~ 9175436 (-) False syk
XM_036976709.1 mRNA upstream 855901 9145137 ~ 9175791 (-) False syk
XM_036976710.1 mRNA upstream 855901 9145137 ~ 9199533 (-) True syk
TU413195 other downstream 1560035 6602005 ~ 6725980 (-) True LOC110524941
TU413187 other downstream 1731300 6543675 ~ 6554715 (-) False G363470
TU413188 other downstream 1734341 6543675 ~ 6551674 (-) True G363470
TU411115 other downstream 2331764 5945472 ~ 5954251 (-) True LOC110523123
TU410367 other downstream 3204147 5080578 ~ 5081868 (-) False G361170
TU414159 other upstream 14031 8303267 ~ 8304183 (-) True G364322
TU414654 other upstream 758306 9047542 ~ 9050708 (-) False G364754
TU415770 other upstream 900433 9189669 ~ 9190098 (-) True G365752
TU418958 other upstream 3844816 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 4416330 12705566 ~ 12706092 (-) False G368921

Expression Profile