RNA id: TU412441



Basic Information


Item Value
RNA id TU412441
length 483
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G362812
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8309554 ~ 8310216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaataatcaacaacaagtgggacacaatcatgaagtggggccgaatactttcgcaaggcactgtatctgactATCTGGTGTCTACAGTACCTATCTGGTGTCTACACTACCTATCTGACTATCTGGTGTATACAGTACCTATCTGACTCTCTGGTGTCTACACTACCTATCTGGTGTCTACACTACcTATCTGACTATCTGGTGTCTACAGTAATTATCTGGTGTCTACAGTACCTATCTGACTCTCTGGTGTCTACACTACCTATCTGACTCTCTGGTGTCTACAGTAATTATCTGGTGTCTACAGTACCTATCTGACTCTggtcacattttgttactttacagctttattcaaaaaatgtattaaatcgttttttccctcatcaatctacacacaatacccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU412433 lncRNA upstream 2407 8306567 ~ 8307147 (+) True isoc1
TU412432 lncRNA upstream 2571 8306526 ~ 8306983 (+) False isoc1
TU412405 lncRNA upstream 8528 8231936 ~ 8301026 (+) True G362784
TU412412 lncRNA upstream 61820 8246133 ~ 8247734 (+) True G362790
TU412411 lncRNA upstream 62236 8244701 ~ 8247318 (+) False G362789
TU412443 lncRNA downstream 1034 8311250 ~ 8311567 (+) True G362814
TU412444 lncRNA downstream 1909 8312125 ~ 8312430 (+) True G362815
TU412448 lncRNA downstream 5433 8315649 ~ 8315852 (+) True G362819
TU412453 lncRNA downstream 9643 8319859 ~ 8320162 (+) True G362824
TU412456 lncRNA downstream 13072 8323288 ~ 8323490 (+) True G362827
XM_021601561.2 mRNA upstream 2539 8290855 ~ 8307015 (+) False isoc1
XM_021601559.2 mRNA upstream 20297 8250159 ~ 8289257 (+) True slc27a6
XM_036976695.1 mRNA upstream 440989 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA upstream 440989 7746330 ~ 7868565 (+) True mapkap1
XR_005051634.1 mRNA upstream 567629 7730984 ~ 7741925 (+) True LOC118964556
XM_036976698.1 mRNA downstream 73429 8383645 ~ 8507630 (+) True LOC110524944
XM_036976534.1 mRNA downstream 200417 8510633 ~ 8515635 (+) True minar2
XM_036976699.1 mRNA downstream 207040 8517256 ~ 8701336 (+) False chsy3
XR_005051936.1 mRNA downstream 397523 8707739 ~ 8712041 (+) True LOC118964742
XM_021601567.2 mRNA downstream 459568 8769784 ~ 8772389 (+) True lyrm7
TU412257 other upstream 389989 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 617040 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1119735 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1119735 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2468285 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 465116 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 918622 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1538487 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2666466 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 3115426 11425642 ~ 11428710 (+) True G366973

Expression Profile