RNA id: TU412456


Basic Information

Item Value
RNA id TU412456
length 203
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G362827
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8323288 ~ 8323490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctcaatcagaggctggtgtcgttgtctctgattgagaatcatacttaggtagccttttcccacctgtgtggtgtgggtgattattttctgttctgtgtttttcttcatcgtacaggactgttcgtttgtcttttttttcagtgttcagttgtttcattaaagaatatgaacacttaccatgctgcgcattagtcctcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412453 lncRNA upstream 3126 8319859 ~ 8320162 (+) True G362824
TU412448 lncRNA upstream 7436 8315649 ~ 8315852 (+) True G362819
TU412444 lncRNA upstream 10858 8312125 ~ 8312430 (+) True G362815
TU412443 lncRNA upstream 11721 8311250 ~ 8311567 (+) True G362814
TU412441 lncRNA upstream 13072 8309554 ~ 8310216 (+) True G362812
TU412461 lncRNA downstream 8597 8332087 ~ 8332601 (+) True G362832
TU412469 lncRNA downstream 24520 8348010 ~ 8348224 (+) True G362840
TU412472 lncRNA downstream 26755 8350245 ~ 8350504 (+) True G362843
TU412475 lncRNA downstream 27841 8351331 ~ 8351732 (+) True G362846
TU412482 lncRNA downstream 36679 8360169 ~ 8360381 (+) True G362853
XM_021601561.2 mRNA upstream 16273 8290855 ~ 8307015 (+) False isoc1
XM_021601559.2 mRNA upstream 34031 8250159 ~ 8289257 (+) True slc27a6
XM_036976695.1 mRNA upstream 454723 7742247 ~ 7868565 (+) False mapkap1
XM_036976696.1 mRNA upstream 454723 7746330 ~ 7868565 (+) True mapkap1
XR_005051634.1 mRNA upstream 581363 7730984 ~ 7741925 (+) True LOC118964556
XM_036976698.1 mRNA downstream 60155 8383645 ~ 8507630 (+) True LOC110524944
XM_036976534.1 mRNA downstream 187143 8510633 ~ 8515635 (+) True minar2
XM_036976699.1 mRNA downstream 193766 8517256 ~ 8701336 (+) False chsy3
XR_005051936.1 mRNA downstream 384249 8707739 ~ 8712041 (+) True LOC118964742
XM_021601567.2 mRNA downstream 446294 8769784 ~ 8772389 (+) True lyrm7
TU412257 other upstream 403723 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 630774 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1133469 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1133469 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2482019 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 451842 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 905348 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1525213 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2653192 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 3102152 11425642 ~ 11428710 (+) True G366973

Expression Profile