RNA id: TU414247


Basic Information

Item Value
RNA id TU414247
length 504
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G364393
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8426637 ~ 8427140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTGTGCTGCTCAGTGTGAATGCACCCTTAGAAAAGAAATTACGCCATTTCCGATGCAGTTCATGCCATGTGTAATCGACACGCATTTCCTAGTGCTTCACTCACCTGCATGTTCTGACAGTGGGAGGCGGTGGTTCCGAAGAGGATCTGACACTGTTCATCTGCCGTGTAAGTCATCCCTGGGTGTTTGAATGGCAGGATCACTGAGTTCAAGCTCAGCGGGTCGGTCTGGAGGAGACAACTACTGGCCTTGGAcctacgacacacacacacggacacacggacacacacacagaaacgttCTCTATTGAGTCACTCTCCACTAACCTGGCAAAGAAGTGACTTCCGATTGAGGGCATTTCACGTCACTATggcaaatactatttgaacccaggtctgggttcataaagcgtctcagattAGGAGTTCTGATcaaggatcaggtccccctgtcgatataatcttattcatcatgatctaaaaggctaaactgatttgTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414239 lncRNA downstream 11452 8414858 ~ 8415185 (-) True G364385
TU414233 lncRNA downstream 25450 8400953 ~ 8401187 (-) True G364379
TU414231 lncRNA downstream 30177 8395516 ~ 8396460 (-) True G364377
TU414227 lncRNA downstream 35492 8390688 ~ 8391145 (-) True G364373
TU414224 lncRNA downstream 40797 8385623 ~ 8385840 (-) True G364370
TU414301 lncRNA upstream 95019 8522159 ~ 8524108 (-) True G364437
TU414305 lncRNA upstream 107693 8534833 ~ 8535267 (-) True G364441
TU414306 lncRNA upstream 110056 8537196 ~ 8537565 (-) True G364442
TU414309 lncRNA upstream 114065 8541205 ~ 8541527 (-) True G364445
TU414315 lncRNA upstream 126934 8554074 ~ 8554298 (-) True G364451
XM_021601558.2 mRNA downstream 197346 8208382 ~ 8229291 (-) True LOC110523142
XM_021601557.2 mRNA downstream 197358 8206491 ~ 8229279 (-) False LOC110523142
XM_036976697.1 mRNA downstream 222119 7882389 ~ 8204518 (-) True LOC110524943
XM_036976691.1 mRNA downstream 704510 7593362 ~ 7722127 (-) False LOC110523137
XM_021601566.2 mRNA upstream 333691 8760831 ~ 8765948 (-) True hint1
XM_036976535.1 mRNA upstream 430477 8857617 ~ 8864575 (-) True LOC110524946
XM_036976711.1 mRNA upstream 717997 9145137 ~ 9175436 (-) False syk
XM_036976709.1 mRNA upstream 717997 9145137 ~ 9175791 (-) False syk
XM_036976710.1 mRNA upstream 717997 9145137 ~ 9199533 (-) True syk
TU414159 other downstream 122454 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 1700657 6602005 ~ 6725980 (-) True LOC110524941
TU413187 other downstream 1871922 6543675 ~ 6554715 (-) False G363470
TU413188 other downstream 1874963 6543675 ~ 6551674 (-) True G363470
TU411115 other downstream 2472386 5945472 ~ 5954251 (-) True LOC110523123
TU414654 other upstream 620402 9047542 ~ 9050708 (-) False G364754
TU415770 other upstream 762529 9189669 ~ 9190098 (-) True G365752
TU418958 other upstream 3706912 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 4278426 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 4278426 12705566 ~ 12706092 (-) True G368921

Expression Profile