RNA id: TU412614



Basic Information


Item Value
RNA id TU412614
length 360
lncRNA type intronic
GC content 0.39
exon number 6
gene id G362960
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8574992 ~ 8578418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTAGTTATAAGGCCCCATAGTTACACAACCTTAACTGTCTTGGTGGGTCTAGTTATAAAGCCCCATAGTTACACAACCTTCACTGTCTTTGTGGTTCTAGTTATAAAGCCCCATAGTAAGACAACCTTCACTGTCTTTGTGGTTCTAGTTATAAGGCCCCATAGTTACACAACCTTAACTGTCTTTGTGGTTCTAGTTATAAGGCCCCATAGTAAGACAACCTTAACTGTCTTTGTGGTTCTAGTTATAAGACCCCATAGTTACCAACCTTTACTGTCTTGTAGAATCTAGTTATAAGACCCCATAGTTACACAACCTTTACTGTCTTGTAGGATCTAGTTATAAGGCCCCATAGTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU412610 lncRNA upstream 1588 8573058 ~ 8573404 (+) True G362959
TU412595 lncRNA upstream 27923 8546677 ~ 8547069 (+) True G362944
TU412596 lncRNA upstream 28438 8546296 ~ 8546554 (+) True G362945
TU412602 lncRNA upstream 36919 8537582 ~ 8538073 (+) True G362951
TU412543 lncRNA upstream 139672 8435072 ~ 8435320 (+) True G362898
TU412617 lncRNA downstream 17729 8596147 ~ 8596390 (+) True G362963
TU412635 lncRNA downstream 57315 8635733 ~ 8636813 (+) True G362976
TU412640 lncRNA downstream 62619 8641037 ~ 8641258 (+) True G362981
TU412642 lncRNA downstream 63743 8642161 ~ 8642388 (+) True G362983
TU412653 lncRNA downstream 83541 8661959 ~ 8664717 (+) False G362994
XM_036976534.1 mRNA upstream 59357 8510633 ~ 8515635 (+) True minar2
XM_036976698.1 mRNA upstream 67362 8383645 ~ 8507630 (+) True LOC110524944
XM_021601561.2 mRNA upstream 267977 8290855 ~ 8307015 (+) False isoc1
XM_021601559.2 mRNA upstream 285735 8250159 ~ 8289257 (+) True slc27a6
XM_036976696.1 mRNA upstream 706427 7746330 ~ 7868565 (+) True mapkap1
XR_005051936.1 mRNA downstream 129321 8707739 ~ 8712041 (+) True LOC118964742
XM_021601567.2 mRNA downstream 191366 8769784 ~ 8772389 (+) True lyrm7
XM_036976700.1 mRNA downstream 196716 8775134 ~ 8848988 (+) False cdc42se2
XM_036976701.1 mRNA downstream 196716 8775134 ~ 8848988 (+) False cdc42se2
XM_036976704.1 mRNA downstream 302636 8881054 ~ 8900229 (+) False sptlc1
TU412257 other upstream 655427 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 882478 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1385173 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1385173 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2733723 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 196914 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 650420 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1270285 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2398264 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2847224 11425642 ~ 11428710 (+) True G366973

Expression Profile