RNA id: TU414345


Basic Information

Item Value
RNA id TU414345
length 593
lncRNA type intronic
GC content 0.43
exon number 1
gene id G364476
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8589990 ~ 8590582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACAACATtcataccactttgaagatgcaaattaTGTTtatttgtgaaacaaacaagaaatgggacaaaaaaaacggaaaacttgagcgtgcataactattcacccccccaatgtcaatactttgtagagccaccttttgcagcaattacagatgtaagtctcttggggtatgtctctaaaagcttagcacatctagccactgggatttttgcccattcttcaaggcaaaactgctccagctccttcaagttggatgagttctgctggtgtacagcaatctttaagtcataccacagattctcaattggattgaggtctgggctttgactaggccattccaagacatttaaatgtttccccttaaaccactcaagtgttgctttagcagtatgcttagggtcattgtcctgctggaagttgaacctctgtcccagtctcaaatctctggactgaaacaggtttccttcaagaatgtccctgtatttagcgccatccatcattccttcaattctgaacagtttcccagtccctgccgatgaaaaacatccccacagcatgatgctgccaccaccactgtggggatggtgttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414333 lncRNA downstream 11703 8577982 ~ 8578287 (-) True G364466
TU414323 lncRNA downstream 26156 8563627 ~ 8563834 (-) True G364459
TU414315 lncRNA downstream 35692 8554074 ~ 8554298 (-) True G364451
TU414309 lncRNA downstream 48463 8541205 ~ 8541527 (-) True G364445
TU414306 lncRNA downstream 52425 8537196 ~ 8537565 (-) True G364442
TU414346 lncRNA upstream 32 8590614 ~ 8591030 (-) True G364477
TU414348 lncRNA upstream 4791 8595373 ~ 8595608 (-) True G364479
TU414380 lncRNA upstream 41669 8632251 ~ 8632454 (-) True G364511
TU414381 lncRNA upstream 42052 8632634 ~ 8632894 (-) True G364512
TU414382 lncRNA upstream 47436 8638018 ~ 8638272 (-) True G364513
XM_021601558.2 mRNA downstream 360699 8208382 ~ 8229291 (-) True LOC110523142
XM_021601557.2 mRNA downstream 360711 8206491 ~ 8229279 (-) False LOC110523142
XM_036976697.1 mRNA downstream 385472 7882389 ~ 8204518 (-) True LOC110524943
XM_036976691.1 mRNA downstream 867863 7593362 ~ 7722127 (-) False LOC110523137
XM_021601566.2 mRNA upstream 170249 8760831 ~ 8765948 (-) True hint1
XM_036976535.1 mRNA upstream 267035 8857617 ~ 8864575 (-) True LOC110524946
XM_036976711.1 mRNA upstream 554555 9145137 ~ 9175436 (-) False syk
XM_036976709.1 mRNA upstream 554555 9145137 ~ 9175791 (-) False syk
XM_036976710.1 mRNA upstream 554555 9145137 ~ 9199533 (-) True syk
TU414159 other downstream 285807 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 1864010 6602005 ~ 6725980 (-) True LOC110524941
TU413187 other downstream 2035275 6543675 ~ 6554715 (-) False G363470
TU413188 other downstream 2038316 6543675 ~ 6551674 (-) True G363470
TU411115 other downstream 2635739 5945472 ~ 5954251 (-) True LOC110523123
TU414654 other upstream 456960 9047542 ~ 9050708 (-) False G364754
TU415770 other upstream 599087 9189669 ~ 9190098 (-) True G365752
TU418958 other upstream 3543470 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 4114984 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 4114984 12705566 ~ 12706092 (-) True G368921

Expression Profile