RNA id: TU412617


Basic Information

Item Value
RNA id TU412617
length 244
lncRNA type intronic
GC content 0.44
exon number 1
gene id G362963
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8596147 ~ 8596390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCAgttctctgtcaacagctctggtggacattcctgcagtcagcatgccaattgcaagctccttcaaaactttagcaatctgtggaattgtgttgtgttacaaaactgcaacttttagagtggccttttattgtccccagcacaaggtgtaatgatcatgctgtttaatcagcttcgggtggatggattgtcttggcaaatgagaaatgctcactgacagggatgtaaacacatttgtgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412614 lncRNA upstream 17729 8574992 ~ 8578418 (+) True G362960
TU412615 lncRNA upstream 20630 8575070 ~ 8575517 (+) True G362961
TU412610 lncRNA upstream 22743 8573058 ~ 8573404 (+) True G362959
TU412595 lncRNA upstream 49078 8546677 ~ 8547069 (+) True G362944
TU412596 lncRNA upstream 49593 8546296 ~ 8546554 (+) True G362945
TU412635 lncRNA downstream 39343 8635733 ~ 8636813 (+) True G362976
TU412640 lncRNA downstream 44647 8641037 ~ 8641258 (+) True G362981
TU412642 lncRNA downstream 45771 8642161 ~ 8642388 (+) True G362983
TU412653 lncRNA downstream 65569 8661959 ~ 8664717 (+) False G362994
TU412654 lncRNA downstream 65569 8661959 ~ 8666149 (+) True G362994
XM_036976534.1 mRNA upstream 80512 8510633 ~ 8515635 (+) True minar2
XM_036976698.1 mRNA upstream 88517 8383645 ~ 8507630 (+) True LOC110524944
XM_021601561.2 mRNA upstream 289132 8290855 ~ 8307015 (+) False isoc1
XM_021601559.2 mRNA upstream 306890 8250159 ~ 8289257 (+) True slc27a6
XM_036976696.1 mRNA upstream 727582 7746330 ~ 7868565 (+) True mapkap1
XR_005051936.1 mRNA downstream 111349 8707739 ~ 8712041 (+) True LOC118964742
XM_021601567.2 mRNA downstream 173394 8769784 ~ 8772389 (+) True lyrm7
XM_036976700.1 mRNA downstream 178744 8775134 ~ 8848988 (+) False cdc42se2
XM_036976701.1 mRNA downstream 178744 8775134 ~ 8848988 (+) False cdc42se2
XM_036976704.1 mRNA downstream 284664 8881054 ~ 8900229 (+) False sptlc1
TU412257 other upstream 676582 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 903633 7690440 ~ 7692514 (+) True G362554
TU411797 other upstream 1406328 7185926 ~ 7189819 (+) False G362297
TU411798 other upstream 1406328 7186030 ~ 7189819 (+) True G362297
TU411029 other upstream 2754878 5803828 ~ 5841269 (+) False G361671
TU412732 other downstream 178942 8775332 ~ 8846116 (+) False cdc42se2
TU414760 other downstream 632448 9228838 ~ 9229231 (+) True G364850
TU415150 other downstream 1252313 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 2380292 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2829252 11425642 ~ 11428710 (+) True G366973

Expression Profile