RNA id: TU415797


Basic Information

Item Value
RNA id TU415797
length 212
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G365776
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9230754 ~ 9230965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtacaaagtagtgcactatgtagggaatagggtgccatttgggactaactCAAGGTTGCCTTAATTTCTATATGATTCAGTTAATGAGCACTAGGTGTTTCAGATCAACGTCAGCTTTCAGAGTCTGTGTCAAAAGCTTGTAAGCCCTTCTCTCTCTTGTGAGATCAGCACTGCAGCGATGagattaaatgtgtgtgtgttgggctgagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415793 lncRNA downstream 1515 9228849 ~ 9229239 (-) True G365775
TU415780 lncRNA downstream 17561 9212431 ~ 9213193 (-) True G365762
TU415744 lncRNA downstream 26905 9200498 ~ 9203849 (-) False G365729
TU415745 lncRNA downstream 26905 9200498 ~ 9203849 (-) False G365729
TU415746 lncRNA downstream 26905 9200498 ~ 9203849 (-) True G365729
TU415810 lncRNA upstream 19595 9250560 ~ 9250762 (-) True G365789
TU415835 lncRNA upstream 26321 9257286 ~ 9257530 (-) True G365801
TU415840 lncRNA upstream 33778 9264743 ~ 9264946 (-) True G365806
TU415846 lncRNA upstream 44656 9275621 ~ 9275847 (-) True G365812
TU415847 lncRNA upstream 45087 9276052 ~ 9276259 (-) True G365813
XM_036976710.1 mRNA downstream 31221 9145137 ~ 9199533 (-) True syk
XM_036976709.1 mRNA downstream 54963 9145137 ~ 9175791 (-) False syk
XM_036976711.1 mRNA downstream 55318 9145137 ~ 9175436 (-) False syk
XM_036976535.1 mRNA downstream 366179 8857617 ~ 8864575 (-) True LOC110524946
XM_021601566.2 mRNA downstream 464806 8760831 ~ 8765948 (-) True hint1
XM_021601582.2 mRNA upstream 72679 9303644 ~ 9306869 (-) True LOC110523157
XM_036976715.1 mRNA upstream 87560 9318525 ~ 9321762 (-) True LOC118964557
XM_036979092.1 mRNA upstream 91949 9322914 ~ 9324963 (-) True LOC118964743
NM_001124716.1 mRNA upstream 99840 9330805 ~ 9333401 (-) True lyz2
XM_021601583.2 mRNA upstream 124256 9355221 ~ 9361224 (-) True macir
TU415770 other downstream 40656 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 180046 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 926571 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 2504774 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 2679080 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 2903087 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 3474601 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 3474601 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 4976225 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 5196373 14427338 ~ 14428591 (-) True G370635

Expression Profile