RNA id: TU414789



Basic Information


Item Value
RNA id TU414789
length 411
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G364879
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9285274 ~ 9285684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTTATTTACAAAAATCTACAGACCAGGTAGAAATTGACtctactgacattttcaatctctcctttTCCCAGTcggtaatcccaacatgtttcaagctgaccaccattgtcCATGTTCCCAAGAACtcccaaggtaacctgcctaaatgactatcgccctgaagcactcacatctgtaattatgaatttgaaaggctggtcatgacacacatcaacaccatcatcccagacaccatggacccactccaattcccattacaccccaacagatccaccgGTGACTCCtcccactgccctctcccaccagGACAAGAGGTGAAATAActgtcagaatgctgttcatagagtTCAGCCTTcagcaccatagtaccctccaagcttatcACCAAGTTGGGGACCCTTGGAccgaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU414786 lncRNA upstream 4746 9280293 ~ 9280528 (+) True G364876
TU414781 lncRNA upstream 18548 9266317 ~ 9266726 (+) True G364871
TU414780 lncRNA upstream 20430 9264489 ~ 9264844 (+) True G364870
TU414779 lncRNA upstream 25972 9259011 ~ 9259302 (+) True G364869
TU414766 lncRNA upstream 43562 9241255 ~ 9241712 (+) True G364856
TU414790 lncRNA downstream 80 9285764 ~ 9286110 (+) True G364880
TU414791 lncRNA downstream 556 9286240 ~ 9286857 (+) True G364881
TU414793 lncRNA downstream 17958 9303642 ~ 9319132 (+) False G364882
TU414796 lncRNA downstream 17958 9303642 ~ 9333489 (+) False G364882
TU414797 lncRNA downstream 17958 9303642 ~ 9331456 (+) False G364882
XM_021601580.2 mRNA upstream 81420 9198915 ~ 9203854 (+) True LOC110523155
XM_036976707.1 mRNA upstream 186272 9048724 ~ 9099002 (+) True auh
XM_021601575.2 mRNA upstream 238549 9041049 ~ 9046725 (+) False nfil3
XM_021601577.2 mRNA upstream 238549 9041065 ~ 9046725 (+) True nfil3
trnas-uga mRNA upstream 342129 8943072 ~ 8943145 (+) True trnas-uga
XM_021601581.2 mRNA downstream 1373 9287057 ~ 9303171 (+) False pdzph1
XM_036976713.1 mRNA downstream 1380 9287064 ~ 9303171 (+) False pdzph1
XM_036976712.1 mRNA downstream 4069 9289753 ~ 9303171 (+) True pdzph1
NM_001124216.1 mRNA downstream 374128 9659812 ~ 9677491 (+) True st8sia4
XM_021601309.2 mRNA downstream 404825 9690509 ~ 9691996 (+) True LOC110522837
TU414760 other upstream 56043 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 439158 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1365709 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1592760 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2095455 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 563019 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1690998 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2139958 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2592645 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3823012 13108696 ~ 13109134 (+) True G368440

Expression Profile