RNA id: TU414798


Basic Information

Item Value
RNA id TU414798
length 2181
lncRNA type read_through
GC content 0.42
exon number 5
gene id G364882
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9303642 ~ 9378722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaacatgaacttgttttatttttatgGGTAAGCATGTTGAGCTGTTTACTGATTTGACATGAAGTAATATTATACATTATATATGATTATACATTTGACACAAAAAAAAACGGATTATTAGTGATTTActttgtattataaactgggtggttcgaccCCTGAAtggtgattggctgaaagccgtggtataccacaggtatgacgaaacatttatttttacttctctaattacgtcggtaaccagtttataacagcaataaggcacctcgggggtttgtggtatatggccaatataccatgactaagggctgtatccaggcaatcagcgttgcgtcgtgcataagaacagcctttagccgtggtatattggccagaTACCACACCCCCTAGGCCCTTATTGCTTAAATCTAAAATGTATCAATATGTGAAAGTTTACTAGTTAAAGCTGCAGATGCTGATGGATAGTACAGAATGGATCCATCCTATTAGTTAAGTCTGCTTCAGAATGGTTTGAGAAGTGTTCAGCTGCTCCAGTATGGTCTTAGACCCCGCAGCCAGCCACGTAGGACCTCAGGTCCTGATTCTGACAGTGAAGGCGCCAAGCCACCCTGCCCCGATTCCGTTCGGGTCCAACACCACACGCTTGGCACAACGGATCGCCACTGTGAGGTCAGCAGTTAGCAGCTCTGTCAGAAGTAAGAGGAAGGGAAACCTTTAGTCATAGTACCGTACGGGAAACAGGAGGAACCAAAAGcttagaaaaacaacaacaacaacagcagattACTGTACAATGAAACAATAAAGGTAAGTTGGGTCAGGGTTTAGAATAGAGAAGTAGGCCTACCGGGAGCCCCAGTGTCTGTTTATTCTCATTTTGACTGTATTCAAATGTAACATCCGAATTATGTAAGATCAACattatagtgccttcagaaagtattaatacccctttaccttttacacattttattgtgtttttttgttgtgtgaTTTAAgacacacattttgttgtttgatttaagtcaaaactgtaactatgtCACTCAGGAAAAtgagtcttcttggtaagcaactccggtgtatgtttggccttatgttttaggttattgtcctgctgaaaggtatatttgtctcccagtgttacGTATACGCTGGGAGTCGgaaagcaggtgcagaaggtgatTTTAATACGGAACAGATACAAAAGAACAAACATGGGAAGCGTACTGAACGTGAGAGACAATCAATAACACCTAAGGACTGATGAACACAGAGGCTAAATAAAGGGGAAGTAATCAGGGATGTGATTAGGATTTTCATTCAGGCTTTTTCCTGTGTTTAGCTCTATTCTGtgtctttttatcctaaaaaactccctagtccttgccaatgacaagcataccgataacatgatgctgccatcaccatgcttgaaaatatgaagagtgttactcagtgatgtgttgtgttggatttcccccaaacataacgctttgtattcagggcatAAAGTGaattattttccacattgtagtattactttagtgccttattgcaaacaggatgcatgttttagaatatttgtattctgtacagacttccttcttatcattctgtcatttaggttagtattatggagcaaatacaatgttgttgattcatcctcagttttcacAGCCATTAAGCCCTCAACCCGGCACATTTCTTGTCAAAAGTAATGCTCTATGTACGCGATGCCATTCGGTAGACAGGCAACTCACGGCTGCAGCGGATACCACAGACGTTCTTAGCCCCCGGGGTACGTCCGTCGTCACACCAGTAGCGGCTGTTGATCTGGAAGATGCCATAGTCGGTGGAGCCGTCGGTGTTGCGGTTGGTGGCCTGGGTATTGTAGCTCGACTCCCATTTTGACAGGCAAACCCAGTTGGGCAGGCTGTTTCCAGCGTAGCCATCCATTCCGGATGCCTTCAGCGCTCTGGCCAGCTCACATCTGTCATACACCTTAGCACTGGCCACAGCCACAAGCAGGAGAACAACAACAGCTCTCATtatgaacagacagacagctaggtcTAATGGTTTGGATGAAAATAAGCCCTGTGTCTCTAAAAGTGTGAGCAAGTCAACTTCAGCTTTCCTTATAAAGGCTCAGGATGAAAGAGACATTGATATCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414791 lncRNA upstream 16785 9286240 ~ 9286857 (+) True G364881
TU414790 lncRNA upstream 17532 9285764 ~ 9286110 (+) True G364880
TU414789 lncRNA upstream 17958 9285274 ~ 9285684 (+) True G364879
TU414786 lncRNA upstream 23114 9280293 ~ 9280528 (+) True G364876
TU414781 lncRNA upstream 36916 9266317 ~ 9266726 (+) True G364871
TU414839 lncRNA downstream 3567 9337056 ~ 9345277 (+) True G364905
TU414872 lncRNA downstream 46541 9380030 ~ 9381271 (+) True G364936
TU414876 lncRNA downstream 52369 9385858 ~ 9411484 (+) True G364939
TU414878 lncRNA downstream 52966 9386455 ~ 9411967 (+) True G364941
TU414880 lncRNA downstream 112940 9446429 ~ 9447019 (+) True G364943
XM_021601581.2 mRNA upstream 471 9287057 ~ 9303171 (+) False pdzph1
XM_036976713.1 mRNA upstream 471 9287064 ~ 9303171 (+) False pdzph1
XM_036976712.1 mRNA upstream 471 9289753 ~ 9303171 (+) True pdzph1
XM_021601580.2 mRNA upstream 99788 9198915 ~ 9203854 (+) True LOC110523155
XM_036976707.1 mRNA upstream 204640 9048724 ~ 9099002 (+) True auh
NM_001124216.1 mRNA downstream 326323 9659812 ~ 9677491 (+) True st8sia4
XM_021601309.2 mRNA downstream 357020 9690509 ~ 9691996 (+) True LOC110522837
XM_036976723.1 mRNA downstream 360559 9694048 ~ 9731133 (+) True chd1
XR_005051967.1 mRNA downstream 378262 9711751 ~ 9711969 (+) True LOC118964774
XR_005051972.1 mRNA downstream 391949 9725438 ~ 9725565 (+) True LOC118964779
TU414760 other upstream 74411 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 457526 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1384077 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1611128 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2113823 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 515214 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1643193 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2092153 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2544840 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3775207 13108696 ~ 13109134 (+) True G368440

Expression Profile