RNA id: TU414878


Basic Information

Item Value
RNA id TU414878
length 1230
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G364941
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9386455 ~ 9411967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaatactctgtTTGGAGTGTTGCCTTGCATTGCAGAATACTATTCAGTATTCTGGACCATAATTATGTAGTTCCACTTCGTTTGACATTCTAAAAAACATTCCAGATGACAACACTTGTGTTACAATACGATAGATTTTGATCAAGAAATCTGACTGTTTCAGATTGTCACATCCATAACGGAGAGTTTCACATCCATAATCGTTGCTTCTCCTCTCCAAAGTAATAATGCAAGACAATCTTTTCAAAATGGTTGTTTTTGTGTTCAGTCAAGCCGTTCATTCTAAAAGACTTACAAACACAGACTTTTTTCTAATATGTTCAATCTCCCCTGAAATCTTGTACATTTCATGTCAcatccattttttaaaatttatttaactaagcaagtcagttaagaacaaaattcttatttacaatgacggcctactctggccaaacccggatgacgctgtgccaattgcgccccgccctatgggactcccaatcacggccggttgtgatacagcctgaaatcaaaccagggtctgtagtgacgcctctagcactgagaagcagtgccgaggacctctgcgccactcaggaCCAAAAGCGTATTTGCTTTATTTCTTATGTCACATCTATAATGCTGGAATAGCCCAAAGAATGGTCAAATAAAGAGTACATAGACAGAGCAAGCCTATTAGTTACAGTACTACTATAGCAAGTGATGGGTATTCAACCCTAAATCGTTTACCAGTTGCAGCCTTGTCCAGATTCTTCTTGCCTTGCGTGAAAGGGCAGGGCAATATCTTTGCAGGGGTGTAAGTGTTCAAAGGAGTTTTTTTCGCAGCTGGGGAGGAGGCAGAGATGTCCAGGAGTGACTCATGAGATGCAGCGATGGAAGCCAGGAAGTCGTCTATCTGTTTCAGCGAGAGCGAGTTGTGCAGGGTCTCCAGGGGGCATATGGACGGAACCATGGAGTACAGCTCAAAACCTACTCCTGGGGTGAGTTTGTGTTCAGAGTATAGTCTACCAGGTCGCTGTGCATGGGCATTGTTCTCTGACAGAACTTCCACAGAGCCAATCTTTTTGGAGCGGGGCAGTGGGCACTTTCTGTTGATGTAGATGGGGTCAGACACCAGTGGCCTGAACATCATTAGGGCTGCTCGGTCCGGCTCGTCCCGCTTGGCGTTGGCGGCGGCCAACTCCTCGTCGTTGTCTTCCTTAGACTTCTTCTTGGATCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414872 lncRNA upstream 5184 9380030 ~ 9381271 (+) True G364936
TU414811 lncRNA upstream 10549 9321100 ~ 9375906 (+) False G364882
TU414839 lncRNA upstream 41178 9337056 ~ 9345277 (+) True G364905
TU414806 lncRNA upstream 52966 9321100 ~ 9333489 (+) False G364882
TU414880 lncRNA downstream 34462 9446429 ~ 9447019 (+) True G364943
TU414871 lncRNA downstream 41333 9453300 ~ 9453668 (+) True G364935
TU414870 lncRNA downstream 41837 9453804 ~ 9454180 (+) True G364934
TU414868 lncRNA downstream 42390 9454357 ~ 9455065 (+) True G364932
TU414939 lncRNA downstream 65959 9477926 ~ 9481000 (+) False G365001
XM_021601581.2 mRNA upstream 83284 9287057 ~ 9303171 (+) False pdzph1
XM_036976713.1 mRNA upstream 83284 9287064 ~ 9303171 (+) False pdzph1
XM_036976712.1 mRNA upstream 83284 9289753 ~ 9303171 (+) True pdzph1
XM_021601580.2 mRNA upstream 182601 9198915 ~ 9203854 (+) True LOC110523155
XM_036976707.1 mRNA upstream 287453 9048724 ~ 9099002 (+) True auh
NM_001124216.1 mRNA downstream 247845 9659812 ~ 9677491 (+) True st8sia4
XM_021601309.2 mRNA downstream 278542 9690509 ~ 9691996 (+) True LOC110522837
XM_036976723.1 mRNA downstream 282081 9694048 ~ 9731133 (+) True chd1
XR_005051967.1 mRNA downstream 299784 9711751 ~ 9711969 (+) True LOC118964774
XR_005051972.1 mRNA downstream 313471 9725438 ~ 9725565 (+) True LOC118964779
TU414760 other upstream 157224 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 540339 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1466890 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1693941 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2196636 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 436736 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1564715 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 2013675 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2466362 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3696729 13108696 ~ 13109134 (+) True G368440

Expression Profile