RNA id: TU414939


Basic Information

Item Value
RNA id TU414939
length 406
lncRNA type intronic
GC content 0.42
exon number 2
gene id G365001
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9477926 ~ 9481000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcacaccctggtcgaagtattttgtgtttatctttatttatttggtcaggccagggtgtggcatgggtttttgtaggtggtgtgtatgtatggggattgtagctagtggggtgttctagctaagtctatggctgtctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtttgtcgtgggtgattgtccttagtgtcctgatgtcattgttctttgttaggttacacaagtataggctgtttcggttttcgttaagtttattgttttggtagtgtttgtgtttagtgtgttacttcattaaacatggattgcaatagacacgccgcattttggtccgactctccttcacacctagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414868 lncRNA upstream 22861 9454357 ~ 9455065 (+) True G364932
TU414870 lncRNA upstream 23746 9453804 ~ 9454180 (+) True G364934
TU414871 lncRNA upstream 24258 9453300 ~ 9453668 (+) True G364935
TU414880 lncRNA upstream 30907 9446429 ~ 9447019 (+) True G364943
TU414878 lncRNA upstream 65959 9386455 ~ 9411967 (+) True G364941
TU414879 lncRNA downstream 30683 9511683 ~ 9515139 (+) True G364942
TU415042 lncRNA downstream 154188 9635188 ~ 9686962 (+) True G365093
TU415058 lncRNA downstream 197974 9678974 ~ 9681569 (+) True G365109
TU415025 lncRNA downstream 293865 9774865 ~ 9775577 (+) True G365077
TU415124 lncRNA downstream 321618 9802618 ~ 9802835 (+) True G365175
XM_021601581.2 mRNA upstream 174755 9287057 ~ 9303171 (+) False pdzph1
XM_036976713.1 mRNA upstream 174755 9287064 ~ 9303171 (+) False pdzph1
XM_036976712.1 mRNA upstream 174755 9289753 ~ 9303171 (+) True pdzph1
XM_021601580.2 mRNA upstream 274072 9198915 ~ 9203854 (+) True LOC110523155
XM_036976707.1 mRNA upstream 378924 9048724 ~ 9099002 (+) True auh
NM_001124216.1 mRNA downstream 178812 9659812 ~ 9677491 (+) True st8sia4
XM_021601309.2 mRNA downstream 209509 9690509 ~ 9691996 (+) True LOC110522837
XM_036976723.1 mRNA downstream 213048 9694048 ~ 9731133 (+) True chd1
XR_005051967.1 mRNA downstream 230751 9711751 ~ 9711969 (+) True LOC118964774
XR_005051972.1 mRNA downstream 244438 9725438 ~ 9725565 (+) True LOC118964779
TU414760 other upstream 248695 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 631810 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1558361 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1785412 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2288107 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 367703 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1495682 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1944642 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2397329 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3627696 13108696 ~ 13109134 (+) True G368440

Expression Profile