RNA id: TU415058


Basic Information

Item Value
RNA id TU415058
length 2528
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G365109
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9678974 ~ 9681569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGGAAACGTACCTTGAGTTAGGCCTTTTTAGACAATTGTTATTCATTTGTATGCATTATTGGACTgtatacaacaggtgggtctaatcctgaatgctgattgattGAAACCGCATTCCAGTCGGTGTCTTTTCCACAAATTatcaccggctaaatctatgacgttaaaatgcctatttattctgttccatctgactgcgcaatccactgtctcatcagcccagccaggcaatttataaccttgatctccactataaaaagcatctagacattgtCTCACATTTCTtgtagactaacatttagttttcaacaaaGGCAATTTGTATAAACCTCGCTGTCTGTGTCttcgacatttgcaacattgtttcagtaTTCatattcgatctccagctgtccaaaagtaatgaacgtgtcgggagtcgATTCAAGAAagacaggcagcgtttctcagccagtcgataTCTTGAATAAGCTGGCATAATTTTCATGGAtttatatacaaagaaatgtaaattgaaaaaaggtcaaacgaaaggaagtgcagctagtttgcagtctttccagcttcagtttgaagtgattgtgttagctgtgttgttggctagctcctctgaacaacagtgtcctgacaagtgagcacattttctgtgccaggtgaaatcgcgcctcatttgctcattgttatggatgtatccaaataaatgtcactagaaaacagttaAACAAATGCAATTGctgctactttgctgttattctggctgcactgtttgacgtgactgtaagttagccgtagttggctagctagcaagcaagggataagaacattaccagccagtatggcaatggaacatttagaacgattGTCCATAGATagagaacaaaaagactgaacgactgggtcgcgtctctggcaaccgataGAACGAACAACCAGCCGGCCTGGGTAGCAacccctagatttgtgtcgggactatttCTTGTaaaaggatgaaatagtatgaataaatcaatcaaaataatgtttttaatgaaaatatgttaaatcattatttgaatatgttggtaacctgttgtataaaagtgataatgccctccaaacactggcttctctgACATTATCACTTAAGCAAAGTATTGCACCTTGGTGGATTGTGAGGTTACAATGCGGTGGCTGAGCCTCTACAGAGGACCCCCGGGGGAGTATAAATAGCCACTGACTGATTCATCTGATCCAGTTCATTAAACGTTACCATTCCCCTTTAAACAGCTGAATGTAAACACAGCCTAATACCATTGGAATTAATTGGTCTATGTAGCCACTGCAAATCTAAAAATGTATAAGAAAAAAAGATGACAGGAAAGATGTGGAGGTATGGAATGTTATGTTACACTATGAATTATTCATTAGCAATCAGATCTTTCTGTGATTGTTCTTAGTAACAGGATTGTTCTTAGTAACAGGATTCAACATCAGTCTGTTTCACTGTTGAATCTCTTTCATATCTCACACAGAAGTACCTCTTAGATATTTGATATATTTGAACTGCTGCATGCTCATGCTATCCTGTACTAACTTCAACTTCCTGTATTTACATAATGTCAAGACACCCTACCCTTTTTCAGTTTCTTTAATAGGCTTGAATGTAAATGCATTTATCTCACAATATGGATGATGTCATGCAACTGCTAACGAATGTTCAAAAATATCTGCCTCGAGGAGACATTGTATGCTCAAGGAATTCTTAATTACATTTTCTTTACATACCAATttaattttttagttttttttagttttttactCTCAGTATTAAGAAAGTCCAGTTGCTTACAGCTAAAAGATTGTATGTATCTAAGGGGCCTATATATGAAAGTCTGGGACCGTGTTCATAAATCTTCCCACAGAAGTCGTGCTAGTCTGGgaccaaactgatcctagatcagcactcctactctgagctGCTTTATGAATAGAGGCCCTGGACACCAGTGGAGACTGGAGCCCATCCTCCTAACTtctccttccaccagcctccactgtaaGACACCAACTTCTGGTATATGGTGGCATAAATTATGTAAAATGTCCAAAAAAACGTTGCTTTGTAATGAATAATACTGATGTAATTGGGTTTGTGGCAGGTCATTTGTAAATGATCCACTGTCAATGACGACCTAGATAGAATATGGAAATGTACATACATGGTAACATTGAATAAGGAGAACAATGAATGTTAATTAATATATGGTAGGCTAACCATTATAACGAGACATAAGGTTGAATAACTTTTTTCAATACTGCCACAAGCCTTTGAAATGACTGAAATTGTTATGTCTCGTTTGCTTTGTTACACCATGTGTCTGTTTTTGACCGTTCATAACTCTGTAATTTATACAATTCTTGTTTGATGTTCAATATGTAACACCTGTAGTTTGAGTCAATCCGATCAGGTGCTGAATGTCGTGGTAGATTTTCATCCTTTTTTGGTAAAATTTGATACCATTTTGTTTTACAGCTTCTTTTTTTAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414879 lncRNA upstream 163835 9511683 ~ 9515139 (+) True G364942
TU414939 lncRNA upstream 197974 9477926 ~ 9481000 (+) False G365001
TU414940 lncRNA upstream 197974 9477926 ~ 9481000 (+) False G365001
TU414941 lncRNA upstream 197974 9477926 ~ 9481000 (+) True G365001
TU414868 lncRNA upstream 223909 9454357 ~ 9455065 (+) True G364932
TU415025 lncRNA downstream 93296 9774865 ~ 9775577 (+) True G365077
TU415124 lncRNA downstream 121049 9802618 ~ 9802835 (+) True G365175
TU415129 lncRNA downstream 146921 9828490 ~ 9834144 (+) True ca9
TU415143 lncRNA downstream 159006 9840575 ~ 9840959 (+) True G365190
TU415147 lncRNA downstream 164623 9846192 ~ 9846403 (+) True G365194
NM_001124216.1 mRNA upstream 1483 9659812 ~ 9677491 (+) True st8sia4
XM_021601581.2 mRNA upstream 375803 9287057 ~ 9303171 (+) False pdzph1
XM_036976713.1 mRNA upstream 375803 9287064 ~ 9303171 (+) False pdzph1
XM_036976712.1 mRNA upstream 375803 9289753 ~ 9303171 (+) True pdzph1
XM_021601580.2 mRNA upstream 475120 9198915 ~ 9203854 (+) True LOC110523155
XM_021601309.2 mRNA downstream 8940 9690509 ~ 9691996 (+) True LOC110522837
XM_036976723.1 mRNA downstream 12479 9694048 ~ 9731133 (+) True chd1
XR_005051967.1 mRNA downstream 30182 9711751 ~ 9711969 (+) True LOC118964774
XR_005051972.1 mRNA downstream 43869 9725438 ~ 9725565 (+) True LOC118964779
XM_036976725.1 mRNA downstream 100886 9782455 ~ 9797823 (+) False dcp2
TU414760 other upstream 449743 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 832858 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1759409 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 1986460 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2489155 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 167134 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1295113 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1744073 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2196760 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3427127 13108696 ~ 13109134 (+) True G368440

Expression Profile