RNA id: TU416033


Basic Information

Item Value
RNA id TU416033
length 223
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G365980
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9693128 ~ 9693350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAAAAGAGTGCCATGATaaaacaagttttgatcagtcatggaaataaaagtgctgaaaacaaattgactccctatttaaaaagaagatggagaacaagctatgaaggaaaaatactggagttttggtctAGGTACCAACTAGTGCAAAATGAGTCTTGGGATATTGTCAAAGCGATTACGatatatcgtcaaaaataatatcACGATATGTAACTGTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416025 lncRNA downstream 22960 9669609 ~ 9670168 (-) True G365972
TU415974 lncRNA downstream 114300 9578552 ~ 9578828 (-) True G365923
TU415968 lncRNA downstream 122265 9569628 ~ 9570863 (-) True G365918
TU415829 lncRNA downstream 239481 9453298 ~ 9453647 (-) True G365795
TU415830 lncRNA downstream 240722 9353479 ~ 9452406 (-) True G365796
TU416080 lncRNA upstream 28342 9721692 ~ 9722913 (-) False G366019
TU416081 lncRNA upstream 28342 9721692 ~ 9722913 (-) False G366019
TU416082 lncRNA upstream 29026 9722376 ~ 9722913 (-) True G366019
TU416103 lncRNA upstream 62090 9755440 ~ 9756715 (-) True LOC110522838
TU416140 lncRNA upstream 117574 9810924 ~ 9811502 (-) True G366077
XR_005051937.1 mRNA downstream 68389 9623770 ~ 9624739 (-) True LOC118964744
XM_036976720.1 mRNA downstream 82578 9454461 ~ 9610550 (-) True pam
XM_036976719.1 mRNA downstream 82601 9454461 ~ 9610527 (-) False pam
XR_002473370.2 mRNA upstream 61937 9755287 ~ 9756985 (-) False LOC110522838
NM_001165180.1 mRNA upstream 69565 9762915 ~ 9775557 (-) True reep5
XM_021601607.2 mRNA upstream 164217 9857567 ~ 9869211 (-) True zgc:114200
XM_021601617.2 mRNA upstream 185899 9879249 ~ 9899368 (-) False tpm2
XM_021601619.2 mRNA upstream 185899 9879249 ~ 9899369 (-) False tpm2
TU415770 other downstream 503030 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 642420 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 1388945 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 2967148 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 3141454 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 2440702 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 3012216 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 3012216 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 4513840 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 4733988 14427338 ~ 14428591 (-) True G370635

Expression Profile