RNA id: TU415025


Basic Information

Item Value
RNA id TU415025
length 376
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G365077
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9774865 ~ 9775577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAATATTTGGTTTGCTAAATGACCAATTtatgagaagaagaaaaagactTACGATATGTAGGCTGGATAAACAAATCCGATGAGGTTGCACAGTAGGGAGGCTCCATACCCAATAACCAGGTAAATTGCGAGAATGACGACACCGATTGCGATATAGGCCCTGTTTACTCCAGTTTTAGCTTCTATCTTTGCCAATGCATCGGTCATGAAATTCTTTTCATGAAGAAACTTGTCGAATCTCTCTTTTATGTCCTGTACCATTGCTGCCATGATTTTCGTGTTGTATGGTGCTGGTTGGCTATTGAACTGCGACACCCATGCAACTCTATCCTGCTTCTTCTCGCTGTTCAGAGTAAATGAATGGAAGCACGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415042 lncRNA upstream 87903 9635188 ~ 9686962 (+) True G365093
TU415058 lncRNA upstream 93296 9678974 ~ 9681569 (+) True G365109
TU414879 lncRNA upstream 259726 9511683 ~ 9515139 (+) True G364942
TU414939 lncRNA upstream 293865 9477926 ~ 9481000 (+) False G365001
TU414940 lncRNA upstream 293865 9477926 ~ 9481000 (+) False G365001
TU415124 lncRNA downstream 27041 9802618 ~ 9802835 (+) True G365175
TU415129 lncRNA downstream 52913 9828490 ~ 9834144 (+) True ca9
TU415143 lncRNA downstream 64998 9840575 ~ 9840959 (+) True G365190
TU415147 lncRNA downstream 70615 9846192 ~ 9846403 (+) True G365194
TU415148 lncRNA downstream 71297 9846874 ~ 9847079 (+) True G365195
XM_036976723.1 mRNA upstream 43732 9694048 ~ 9731133 (+) True chd1
XR_005051972.1 mRNA upstream 49300 9725438 ~ 9725565 (+) True LOC118964779
XR_005051967.1 mRNA upstream 62896 9711751 ~ 9711969 (+) True LOC118964774
XM_021601309.2 mRNA upstream 82869 9690509 ~ 9691996 (+) True LOC110522837
NM_001124216.1 mRNA upstream 97374 9659812 ~ 9677491 (+) True st8sia4
XM_036976725.1 mRNA downstream 6878 9782455 ~ 9797823 (+) False dcp2
XM_036976724.1 mRNA downstream 6880 9782457 ~ 9797823 (+) True dcp2
XM_036976728.1 mRNA downstream 35147 9810724 ~ 9834173 (+) False ca9
XM_036976726.1 mRNA downstream 35148 9810725 ~ 9834171 (+) False ca9
XM_036976730.1 mRNA downstream 95050 9870627 ~ 9874229 (+) False LOC110523166
TU414760 other upstream 545634 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 928749 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1855300 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2082351 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2585046 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 73126 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1201105 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1650065 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2102752 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3333119 13108696 ~ 13109134 (+) True G368440

Expression Profile